TABLE 6.
Classification |
Total Sequences (%) |
SEM | P-Value | Function | |||||
Hanwoo |
Holstein |
||||||||
TMR | SF | TMR | SF | Breed | FS | Breed × FS | |||
Archaea: Bacteria | 0.010 | 0.014 | 0.007 | 0.005 | 0.003 | 0.022 | 0.787 | 0.041 | |
Phylum level | |||||||||
Euryarchaeota | 0.942 | 1.358 | 0.729 | 0.527 | 0.300 | 0.022 | 0.790 | 0.041 | Hydrogenotrophic, H2 (U) |
Fibrobacteres | 0.270 | 0.222 | 0.610 | 0.208 | 0.117 | 0.188 | 0.079 | 0.156 | Cellulolytic, acetate, formate, lactate (P) |
Planctomycetes | 0.191 | 0.480 | 0.136 | 0.247 | 0.069 | 0.062 | 0.016 | 0.221 | NH3 oxidation, N2 (P) |
Synergistetes | 0.045 | 0.044 | 0.012 | 0.026 | 0.008 | 0.011 | 0.472 | 0.153 | Saccharolytic |
Genus/family level | |||||||||
Ruminococcus | 6.945 | 9.381 | 11.037 | 5.320 | 2.024 | 0.994 | 0.433 | 0.067 | Cellulolytic, acetate, formate, lactate (P) |
Coriobacteriaceae | 0.518 | 1.046 | 1.395 | 1.615 | 0.352 | 0.093 | 0.401 | 0.639 | Acetate and lactate (P) |
Bifidobacteriaceae | 2.063 | 1.412 | 0.038 | 0.082 | 0.555 | 0.057 | 0.392 | 0.335 | Acetate and lactate (P) |
Methanobrevibacter | 0.874 | 1.297 | 0.697 | 0.500 | 0.292 | 0.025 | 0.773 | 0.046 | Hydrogenotrophic, H2 (U) |
CF231 | 1.026 | 0.618 | 1.367 | 0.264 | 0.382 | 0.975 | 0.256 | 0.094 | Proteolytic, NH3 (P) |
Succiniclasticum | 1.370 | 0.485 | 0.330 | 0.461 | 0.299 | 0.099 | 0.225 | 0.113 | Succinate (U), propionate (P) |
Christensenellaceae | 0.385 | 0.436 | 0.388 | 0.148 | 0.194 | 0.453 | 0.326 | 0.045 | Fibre degrader |
Fibrobacter | 0.270 | 0.222 | 0.610 | 0.208 | 0.117 | 0.188 | 0.079 | 0.156 | VFA (P) |
p-75-a5 | 0.240 | 0.360 | 0.449 | 0.170 | 0.065 | 0.886 | 0.244 | 0.009 | Fibrolytic |
Pirellulaceae | 0.191 | 0.480 | 0.135 | 0.247 | 0.070 | 0.061 | 0.016 | 0.222 | NH3 oxidation, N2 (P) |
Lactobacillus | 0.056 | 0.580 | 0.112 | 0.079 | 0.116 | 0.060 | 0.240 | 0.031 | Lactate (P) |
BF311 | 0.289 | 0.254 | 0.127 | 0.088 | 0.077 | 0.053 | 0.625 | 0.979 | Lignocellulose digestion |
Selenomonas | 0.406 | 0.081 | 0.107 | 0.042 | 0.081 | 0.060 | 0.035 | 0.133 | Acetate, propionate, formate, lactate (P) |
Bulleidia | 0.031 | 0.044 | 0.028 | 0.506 | 0.153 | 0.062 | 0.420 | 0.048 | Acetate, lactate, succinate (P) |
Anaerovibrio | 0.253 | 0.057 | 0.077 | 0.052 | 0.041 | 0.031 | 0.012 | 0.039 | Succinate, propionate (P) |
Desulfovibrio | 0.126 | 0.065 | 0.051 | 0.112 | 0.039 | 0.676 | 0.990 | 0.086 | Sulphur oxidation |
Clostridiaceae | 0.062 | 0.114 | 0.067 | 0.081 | 0.016 | 0.506 | 0.030 | 0.163 | Glucose assimilation |
Lachnospira | 0.012 | 0.010 | 0.002 | 0.266 | 0.095 | 0.083 | 0.398 | 0.062 | Acetate, formate, lactate (P) |
Bacteroides | 0.014 | 0.134 | 0.090 | 0.009 | 0.037 | 0.483 | 0.674 | 0.051 | VFA (P) |
Enterobacteriaceae | 0.025 | 0.081 | 0.041 | 0.035 | 0.025 | 0.372 | 0.536 | 0.077 | N2 fixation |
Atopobium | 0.020 | 0.046 | 0.026 | 0.046 | 0.008 | 0.738 | 0.020 | 0.717 | Lactate (P) |
Spirochaetaceae | 0.053 | 0.042 | 0.028 | 0.008 | 0.016 | 0.014 | 0.053 | 0.535 | Pectinolytic, Formate, acetate, lactate (P) |
vadinCA11 | 0.052 | 0.040 | 0.015 | 0.013 | 0.007 | 0.007 | 0.420 | 0.472 | Methylotrophic |
Pseudomonas | 0.011 | 0.018 | 0.018 | 0.070 | 0.015 | 0.025 | 0.282 | 0.030 | Degrader |
Dehalobacterium | 0.031 | 0.052 | 0.026 | 0.007 | 0.024 | 0.400 | 0.910 | 0.078 | H2 oxidation |
Peptostreptococcaceae | 0.003 | 0.007 | 0.030 | 0.074 | 0.023 | 0.081 | 0.476 | 0.104 | N.I. |
Pyramidobacter | 0.033 | 0.030 | 0.010 | 0.026 | 0.008 | 0.059 | 0.528 | 0.092 | Iso-fatty acids (P) |
Weissella | 0.016 | 0.043 | 0.014 | 0.016 | 0.008 | 0.122 | 0.030 | 0.050 | Lactate (P) |
Leuconostoc | 0.012 | 0.026 | 0.009 | 0.009 | 0.009 | 0.373 | 0.429 | 0.041 | Lactate (P) |
The table only includes taxa represented in >0.01% of the total sequences that tended to differ (0.05 < P < 0.1) and showed significant differences (P < 0.05).
FS, feeding system; N.I., no information; P, producer; SF, separate feeding; TMR, total mixed ration; U, utiliser; VFA, volatile fatty acids.
Data are least square means with standard error.
Number of steers = 8.