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. Author manuscript; available in PMC: 2023 Jan 1.
Published in final edited form as: Methods. 2021 Feb 4;197:97–105. doi: 10.1016/j.ymeth.2021.01.009

List of PDB IDs for RNA-ligand complexes in the data sets

Training set
1AKX 1ET4 1F27 1LVJ 1PBR 1J8G
1KOC 1QD3 1Y26 2ET4 2FD0 2BE0
2BEE 2F4T 2KTZ 2O3X 2XO1 3DIX
3FO4 3GES 3SUH 3SUX 3SKL 4LVW
4LW0 4FEJ 4FEO 4NYB 4KQY 5C45
Test set 1
1AJU 1AM0 1ARJ 1BYJ 1DDY 1EHT
1EI2 1EVV 1F1T 1FMN 1FUF 1FYP
1I7J 1I9V 1J7T 1KOD 1LC4 1MWL
1NBK 1NEM 1NTA 1NTB 1O15 1O9M
1Q8N 1RAW 1TN1 1TN2 1TOB 1UTS
1UUD 1UUI 1XPF 1YKV 1YLS 1YRJ
1ZZ5 292D 2A04 2AU4 2B57 2EES
2EET 2EEU 2EEW 2ESI 2ESJ 2ET3
2ET5 2ET8 2F4S 2F4U 2FCX 2FCY
2FCZ 2G5K 2G5Q 2G9C 2GCV 2GDI
2GIS 2GQ5 2HOP 2JUK 2KD4 2KGP
2KU0 2KX8 2KXM 2L1V 2L8H 2MIY
2MXS 2N0J 2OE5 2OE8 2PWT 2QWY
2TOB 2W89 2XNW 2XNZ 2XO0 2YDH
2YIE 3B4B 3B4C 3C3Z 3C44 3C5D
3C7R 3D0U 3D2X 3DIG 3DIL 3DIM
3DIO 3DIY 3DIZ 3DJ0 3DJ2 3DS7
3DVV 3DVZ 3DW4 3DW6 3E5C 3E5E
3E5F 3F2Q 3F2T 3F4G 3F4H 3FO6
3FU2 3G4M 3GAO 3GCA 3GER 3GOG
3GOT 3GX2 3GX3 3GX5 3GX6 3GX7
3IQN 3IQR 3IRW 3K1V 3LA5 3NPN
3NPQ 3OWI 3OWZ 3Q3Z 3Q50 3RKF
3S4P 3SD3 3SKI 3SKR 3SKT 3SKW
3SKZ 3SLM 3SLQ 3TD1 3TZR 3WRU
4AOB 4B5R 4ERL 4F8U 4F8V 4FE5
4FEL 4FEN 4FEP 4FRG 4GPW 4GPX
4GPY 4JF2 4K32 4L81 4LVV 4LVX
4LVY 4LVZ 4LX5 4LX6 4NYA 4NYC
4NYD 4NYG 4OQU 4P20 4PDQ 4QK8
4QK9 4QKA 4QLM 4QLN 4RZD 4TS0
4TS2 4TZX 4TZY 4WCQ 4WCR 4XNR
4YAZ 4YB0 4YB1 4ZC7 5C7U 5C7W
5NDH 5NEF
Test set 2
1AJU 1AM0 1BYJ 1EHT 1EI2 1F1T
1F27 1FMN 1FYP 1J7T 1KOC 1KOD
1MWL 1NBK 1NEM 1PBR 1Q8N 1TOB
1UTS 1UUD 1UUI 1XPF 1Y26 2BE0
2BEE 2ET8 2F4U 2FCZ 2FD0 2GDI
2O3X 2OE5 2PWT 2TOB 3D2X 3GX2
3SUX 4P20