Table 1.
Observed | Expected | Enrichment | P value | |||
---|---|---|---|---|---|---|
Class | # | #/subject | # | #/subject | ||
All variants | 153 | 1.11 | 154.2 | 1.12 | 0.99 | 0.55 |
Synonymous | 48 | 0.35 | 43.8 | 0.32 | 1.10 | 0.28 |
Protein altering | 101 | 0.73 | 110.4 | 0.80 | 0.92 | 0.83 |
Total missense | 78 | 0.57 | 96.9 | 0.70 | 0.81 | 0.98 |
Damaging missense | 15 | 0.11 | 18.2 | 0.13 | 0.83 | 0.80 |
Loss of function (LOF) | 23 | 0.17 | 13.6 | 0.10 | 1.69 | 0.01 |
Bold values represent significant enrichment.
#, number of de novo variants in 138 probands with sporadic CFM; Rate, number of de novo variants per subject; Damaging missense as called by MetaSVM; Loss of function denotes premature termination, frameshift, or splice site variant. P values represent the uncorrected upper tail of the Poisson probability density function (one-sided).