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. 2021 Jul 21;12:710747. doi: 10.3389/fmicb.2021.710747

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Copyright © 2021 Lee, An, Guk, Song, Yi, Kim and Cho.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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A clonal population analysis of swine ESBL/AmpC-EC isolates using program structure. Each isolate was assigned to five populations based on their ExPEC VFs and E. coli phylogenetic group profile. The ExPEC VFs and E. coli phylogenetic group profile for each clonal population are presented in Table 2. Each isolate is represented by a vertical segment and aligned horizontally according to CCs and STs (x-axis). The proportion of population (Q value) for each isolate is shown as 100% stacked bar plots, with proportions of colored sections representing the probability of belonging to each population within each segment (y-axis). CC, clonal complex; ST, sequence type; STNT, ST non-typable. ^#a, CC205-B1; b, CC376-B1; c, CC12-B2; d, ST3285-B1; e, ST953-A; f, NT-B1; g, ST7203-A; h, STNT-A; I, ST767-B1; and j, ST1011-E.