Table 3.

Interesting linkage disequilibrium (LD) sites of herding genome-wide association study (GWAS) significant variants with r² > 0.8.

Chromosome	Position A	Position B	r2	Gene	Gene region	Gene type
6	40747205	39977184	0.805667	PIGQ	Intron	Protein coding
10	8016660	8037693	0.934985	MSRB3	Exona	Protein coding
10	8016660	8079815	0.908056	LOC111097584	Exon	LncRNA
10	8016660	8079868	0.912205	LOC111097584	Exon	LncRNA
10	8016660	8082492	0.891195	LOC111097584	Exon	LncRNA
10	8016660	8083437	0.917264	LOC111097584	Exon	LncRNA

Position A is the position of herding GWAS significant association sites, and position B is the position of LD sites.

^aOne missense mutation within MSRB3: NC_006592.3:g.8037693 G>A, XP_013972688.1:p.Gly179Ser.