Table 2.

Performance comparison between Sigmap and Uncalled on yeast genome

Dataset	Method	Correctly mapped reads (%)	TP	FP	FN	Precision (%)	Recall (%)	F1-score	Mean time per read (ms)
D1	Sigmap	$97.66$	$29675$	$7$	661	$99.98$	97.82	$0.9889$	59
	Uncalled	97.47	29615	722	$47$	97.62	$99.84$	0.9872	$18.3$
D2	Sigmap	$87.54$	$81892$	$964$	$10683$	$98.84$	$88.46$	$0.9336$	$68.3$
	Uncalled	87.37	81725	1054	10765	98.73	88.36	0.9326	303.1

The best numbers are highlighted in bold.