Table 3.

Performance comparison between Sigmap and Uncalled on green algae genome

Dataset	Method	Correctly mapped reads (%)	TP	FP	FN	Precision (%)	Recall (%)	F1-score	Mean time per read (ms)
D3	Sigmap	$87.86$	$52989$	1694	$5628$	96.90	$90.40$	$0.9354$	509.1
	Sigmap (l3)	86.21	51998	1973	6338	96.34	89.14	0.9260	373
	Sigmap (l4)	83.51	50370	2542	7397	95.20	87.20	0.9102	314.8
	Sigmap (l5)	80.69	48669	3107	8532	94.00	85.08	0.8932	279.6
	Sigmap (l6)	77.20	46564	3781	9962	92.49	82.38	0.8714	$261.2$
	Uncalled	72.18	43534	883	15896	98.01	73.25	0.8384	677
	Uncalled (mask)	76.37	46060	$881$	13372	$98.12$	77.50	0.8660	596.5

The best numbers are highlighted in bold.