REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Deposited data | ||
16 real scRNA-seq datasets with doublet annotations | (Xi and Li, 2020) | https://zenodo.org/record/4562782#.YI2lhWf0mbg |
Synthetic scRNA-seq datasets with ground-truth doublets, cell types, DE genes, and cell trajectories | (Xi and Li, 2020) | https://zenodo.org/record/4562782#.YI2lhWf0mbg |
Software and algorithms | ||
R | https://www.r-project.org/ | https://www.r-project.org/ |
RStudio | https://www.rstudio.com/products/rstudio/download/ | https://www.rstudio.com/products/rstudio/download/ |
Python 3 | https://www.anaconda.com/products/individual | https://www.anaconda.com/products/individual |
devtools | https://cran.r-project.org/web/packages/devtools/devtools.pdf | https://cran.r-project.org/web/packages/devtools/index.html |
Rtools | https://cran.r-project.org/bin/windows/Rtools/ | https://cran.r-project.org/bin/windows/Rtools/ |
DoubletCollection | This paper | https://github.com/xnnba1984/DoubletCollection |