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. 2020 Dec 8;2(1):94–150. doi: 10.1039/d0cb00136h

Thermal denaturation studies (Tm values) of different ODN with complementary RNA and their degradation against mouse liver homogenates137.

ODN (5′ → 3′)a T m with RNA (°C) Mouse liver homogenatesb RNase-H activityc IC50 (nM)
d(GLMeCLATTGGTATTLMeCLAL) 59.4 d 5.8 93
d(GLMeCLA3′SPTTGGTATTLMeCLAL) 60.0 68 17.3 8833
d(GLMeCLA5′SPTTGGTATTLMeCLAL) 58.5 56 9.9 410
d(GLMeCLAT3′SPTGGTATTLMeCLAL) 62.5 34 13.6 936
d(GLMeCLAT5′SPTGGTATTLMeCLAL) 57.4 56 11.4 340
d(GLMeCLATTGG3′SPTATTLMeCLAL) 62.5 1.2 10.0 1345
d(GLMeCLATTGG5′SPTATTLMeCLAL) 58.5 41 11.3 d
d(GLMeCLATTGGTA3′SPTTLMeCLAL) 61.9 1.5 9.8 1129
d(GLMeCLATTGGTA5′SPTTLMeCLAL) 59.0 31 56.9 d
a

3′SP and 5′SP refer to the 3′-SP and the 5′-SP linkages respectively. L refers to LNA residues.

b

% intact gapmer at the end of the experiment.

c

% full length target RNA after 48 h of incubation.

d

Gapmer ODN not tested.