Table 3.
Top differentially regulated genes in ΔaraE biofilms grown in 40 mM L-Arabinose compared to WT 5 mM L-Arabinose by RNA-Seq.
| Gene | Fold Change | Function |
|---|---|---|
| ygbK | 49.07 | putative tRNA synthase |
| ygbL | 33.96 | putative aldolase |
| ygbJ | 31.76 | 3-hydroxyisobutyrate dehydrogenase |
| ygbM | 17.59 | hypothetical protein |
| STM14_3516 | 7.09 | putative nucleoside-diphosphate-sugar epimerase |
| glpF | 6.2 | glycerol diffusion |
| glpK | 5.87 | Glycerol kinase |
| hycH | 5.38 | hydrogenase 3 large subunit processing protein |
| hycD | 5.15 | Hydrogenase 3, membrane subunit |
| STM14_3515 | 5.03 | putative permease |
| hycG | 4.82 | hydrogenase |
| argH | 4.75 | argininosuccinate lyase |
| hycI | 4.46 | Protease involved in processing C-terminal end of HycE |
| hycF | 4.43 | formate hydrogenlyase complex iron-sulfur subunit |
| glpB | 4.27 | anaerobic glycerol-3-phosphate dehydrogenase subunit B |
| glpT | 3.98 | MFS family, sn-glycerol-3-phosphate transport protein |
| STM14_2886 | 3.53 | putative transketolase |
| ulaA_2 | 3.48 | ascorbate-specific PTS system enzyme IIC |
| STM14_3071 | -3.51 | putative inner membrane protein |
| ygaP | -3.52 | putative rhodanese-like sulfurtransferase |
| maf_2 | -3.53 | Maf-like protein |
| folA | -3.61 | Dihydrofolate reductase |
| otsB | -3.7 | trehalose-6-phosphate phosphatase |
| yejG | -3.86 | hypothetical protein |
| yqjI | -3.87 | putative transcriptional regulator |
| lexA | -4.02 | LexA repressor |
| yebG | -4.05 | DNA damage-inducible protein YebG |
| STM14_2428 | -4.16 | hypothetical protein |
| deaD | -4.59 | ATP-dependent RNA helicase DeaD |
| nrdE | -4.65 | ribonucleotide-diphosphate reductase subunit alpha |
| STM14_3374 | -4.95 | putative regulatory protein |
| nrdH | -5.83 | glutaredoxin-like protein |
| csgA | -6.01 | cryptic curlin major subunit |
| sulA | -6.52 | SOS cell division inhibitor |
| deoC | -6.56 | deoxyribose-phosphate aldolase |
| prpB | -6.77 | Serine/threonine-protein phosphatase 2 |
| yjfY | -7.36 | putative outer membrane protein |
| nrdI | -7.49 | Protein NrdI |
| rpoH | -8.44 | RNA polymerase factor sigma-32 |
| prpC | -8.59 | methylcitrate synthase |
| yebE | -8.86 | putative inner membrane protein |
| deoA | -9.35 | thymidine phosphorylase |
| prpD | -12.63 | 2-methylcitrate dehydratase |
| cspA | -12.86 | major cold shock protein |
| cpxP | -14.03 | Periplasmic repressor of cpx regulon by interaction with CpxA |
| ycfR | -14.23 | putative outer membrane protein |
| prpE | -14.98 | Propionate–CoA ligase |
| udp | -31.76 | uridine phosphorylase |
| cdd | -40.17 | cytidine deaminase |
| ycdZ | -71.89 | putative inner membrane protein |