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. 2021 Aug 5;8:203. doi: 10.1038/s41597-021-00986-9

Table 2.

Description of keys present in LIBE dataset entries.

Key Description
molecule_id Unique identifier (format: libe-XXXXXX, where XXXXXX is a 6-digit number
bonds List of pairs (a, b), where a and b are the 0-based indices of bonded atoms
charge Charge of the molecule
chemical_system Collection of elements present (ex: “C-H-O” for a molecule with C, H, and O present)
composition Keys are elements; values are the number of atoms of those elements present
elements List of elements present
formula_alphabetical Simple chemical formula, with elements in alphabetical order (ex: “C4 H8 O1”)
molecule Serialized pymatgen Molecule object, containing species, coordinates, charge, and spin multiplicity
molecule_graph Serialized pymatgen MoleculeGraph object; molecule with graph representation
number_atoms Number of atoms in the molecule
number_elements Number of unqiue elements present in the molecule
partial_charges Atomic partial charges, calculated using various methods (Mulliken, RESP, Critic2)
partial_spins For open-shell molecules, atomic partial spins, calculated with Mulliken population analysis
point_group Molecular point group in Schönflies notation
species Elements present at each atom in the molecule, in order
spin_multiplicity Spin multiplicity (2S + 1) of the molecule
thermo Molecular thermodynamics, calculated from Q-Chem or a modified RRHO method
vibration Calculated vibrational frequencies, and associated vibrational mode vectors and IR intensities
xyz 3D coordinates of the atoms in the molecule, in same order as “species”