Table 2.
Description of keys present in LIBE dataset entries.
| Key | Description |
|---|---|
| molecule_id | Unique identifier (format: libe-XXXXXX, where XXXXXX is a 6-digit number |
| bonds | List of pairs (a, b), where a and b are the 0-based indices of bonded atoms |
| charge | Charge of the molecule |
| chemical_system | Collection of elements present (ex: “C-H-O” for a molecule with C, H, and O present) |
| composition | Keys are elements; values are the number of atoms of those elements present |
| elements | List of elements present |
| formula_alphabetical | Simple chemical formula, with elements in alphabetical order (ex: “C4 H8 O1”) |
| molecule | Serialized pymatgen Molecule object, containing species, coordinates, charge, and spin multiplicity |
| molecule_graph | Serialized pymatgen MoleculeGraph object; molecule with graph representation |
| number_atoms | Number of atoms in the molecule |
| number_elements | Number of unqiue elements present in the molecule |
| partial_charges | Atomic partial charges, calculated using various methods (Mulliken, RESP, Critic2) |
| partial_spins | For open-shell molecules, atomic partial spins, calculated with Mulliken population analysis |
| point_group | Molecular point group in Schönflies notation |
| species | Elements present at each atom in the molecule, in order |
| spin_multiplicity | Spin multiplicity (2S + 1) of the molecule |
| thermo | Molecular thermodynamics, calculated from Q-Chem or a modified RRHO method |
| vibration | Calculated vibrational frequencies, and associated vibrational mode vectors and IR intensities |
| xyz | 3D coordinates of the atoms in the molecule, in same order as “species” |