Table 1.
Summary of hot residues of caspase-6.
| Location | Crucial residues | Refs |
|---|---|---|
| L1/60′s helix | Glu53,Phe55,Phe56, Trp57,His58,Pro62, Glu63*, Arg64*, Arg65* | [22], [29], [27] |
| L2/L2′ | Gln161*, Cys163*†, Arg164*,Gly165,His168, Asp179a, Asp193a,Leu200 | [22], [23] |
| L3 | Ser211,Val212,Glu214e,Gly215,Tyr217*e,Ser218*, His219*e, Arg220*, Glu221*,Thr222*,Val223, Ser226*, Trp227*, | [22], [24], [26], [46] |
| 130′s helix | His121*†,Gly122*e,Glu123e,Gly124,Asn125, His126e,Ile127,Tyr128, Asp131e, Lys133e, Glu135b | [23], [26], [29], [45] |
| Others | Asp23a, Arg42 f, Arg43 f, Arg44f, Lys36c, Arg65f, Gly66f,Ser242, Glu244c,Thr250, Leu251, Val261*,Leu282, His287c, Ser257d | [22], [23], [47], [48], [49] |
Bold: 22 crucial residues calculated by PRS (i.e., Phe55, Phe56, His58, Pro62, Gly165, Leu200, Ser211, Val212, Glu214, Gly215, Try217, Ser218, Thr222, Val223, His121, Gly122, Glu123, Gly124, Asn125, His126, Ile127 and Tyr128);
Italic: functional/allosterically relevant residues reported by previous researches;
† Catalytic dyad residues Cys163 and His121;
* Residues within 5 Å of active site;
Residues involved in caspase-6 events of a proteolysis, b rearrangement of 130′s helix, c zinc-mediated allosteric inhibition, d phosphorylation-mediated allosteric inhibition, e pep419 and Z-VAD-FMK-mediated allosteric inhibition, and f mutation-induced allosteric inhibition.