Table 4.
MsigDB collection | Gene set name | NES | NOM p-val | FDR q-val |
---|---|---|---|---|
c2.cgp.v6.2.symbols.gmt | JAIN_NFKB_SIGNALING | 2.689 | 0.000 | 0.000 |
DANG_MYC_TARGETS_UP | 2.655 | 0.000 | 0.000 | |
WONG_EMBRYONIC_STEM_CELL_CORE | 2.583 | 0.000 | 0.000 | |
WINTER_HYPOXIA_UP | 2.711 | 0.000 | 0.000 | |
WELCSH_BRCA1_TARGETS_DN | 2.798 | 0.000 | 0.000 | |
h.all.v6.0.symbols.gmt | HALLMARK_DNA_REPAIR | 2.683 | 0.000 | 0.000 |
HALLMARK_P53_PATHWAY | 1.778 | 0.000 | 0.000 | |
HALLMARK_PI3K_AKT_MTOR_SIGNALING | 2.199 | 0.000 | 0.000 |
NES normalized enrichment score, NOM nominal, FDR false discovery rate