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. Author manuscript; available in PMC: 2021 Aug 6.
Published in final edited form as: J Psychiatr Res. 2019 Nov 18;121:151–158. doi: 10.1016/j.jpsychires.2019.11.009

Table 3:

eQTL Information for the Top Variants

Variant Studya BrainCloud Hippocampus eQTL Gene BrainCloud Hippocampus eQTL P-valueb,c BrainCloud DLPFC eQTL Gene BrainCloud DLPFC eQTL P-Valueb Braineac eQTL Gene Braineac eQTL P-Valueb,d
rs300802 Current SH3YL1 4.70E-04 SH3YL1 1 15E-03 SH3YL1 7.20E-04
ACP1 0.012 ACP1 8.50E-03
FAM150B 6.30E-03
rs300799 Current SH3 YL1 8.17E-04 SH3YL1 9.67E-04 SH3YL1 7.50E-04
ACP1 0.040 ACP1 8.20E-03
FAM150B 6.20E-03
rs300797 Both SH3YL1 3.26E-04 SH3YL1 7.39E-04 SH3YL1 7.60E-04
ACP1 0.027 ACP1 8.20E-03
FAM150B 6.20E-03
rs300793 Current SH3YL1 2.85E-04 SH3YL1 1 78E-03 SH3YL1 7.60E-04
ACP1 9.45E-03 ACP1 8.20E-03
FAM150B 6.20E-03
rs300778 Both SH3YL1 9.42E-04 SH3YL1 7.18E-04 SH3YL1 7.60E-04
ACP1 8.20E-03
ACP1 0.018 FAM150B 6.20E-03
rs436446 GWAS SH3YL1 3.98E-04 SH3YL1 3 18E-03 SH3YL1 7.60E-04
ACP1 0 014 ACP1 8.20E-03
FAM150B 6.20E-03
rs300774 GWAS SH3 YL1 1.77E-04 SH3YL1 2.00E-03 SH3YL1 7.60E-04
ACP1 8.20E-03
ACP1 0.017 FAM150B 6.20E-03
rs300773 GWAS SH3YL1 4.80E-04 SH3YL1 2.78E-03 SH3YL1 7.60E-04
ACP1 6.45E-03 ACP1 8.20E-03
FAM150B 6.20E-03

eQTL, expression quantitative trait loci; GWAS, genome-wide association study; DLPFC, dorsolateral prefrontal cortex

a

Indicates whether the variant was identified in the current sequencing study, our GWAS, or both.

b

The p-values provided by both BrainCloud and Braineac are false discovery rate-corrected. For BrainCloud, the most significant probe from each brain region is listed. For Braineac, the most significant combined p-value from all brain regions and probes tested is listed.

c

The p-value for SH3YL1 is the top one listed. The p-value for ACP1 is the bottom one listed.

d

The p-value for SH3YL1 is the top one listed. The p-value for ACP1 is the middle one listed. The p-value for FAM150B is the bottom one listed.