Table 1.
Summary of genome assembly and annotation of C. sinensis TGY
| Sequencing | C. sinensis cultivar TGY | |
|---|---|---|
| PacBio Sequel II sequencing | ||
| Raw data (Gb) | 359 | |
| Sequencing depth (×) | 114 | |
| Average reads length (bp) | 1,608 | |
| Reads N50 (bp) | 24,830 | |
| Hi-C sequencing | ||
| Clean data (Gb) | 313 | |
| Sequencing depth (×) | 99.4 | |
| Monoploid genome assembly and annotation | ||
| Estimated genome size (Gb) per 1 C | 3.15 | |
| Assembly size (Gb) | 3.06 | |
| Percent of estimated genome size (%) | 97.1 | |
| Contig N50 (Mb) | 1.94 | |
| BUSCO completeness of assembly (%) | 93.7 | |
| Total number of genes | 42,825 | |
| BUSCO completeness of annotation (%) | 92.1 | |
| Haplotype-resolved chromosomal-level assembly and annotation | ||
| Haplotype A | Haplotype B | |
| Length of chromosomes (Gb) | 3.06 | 2.92 |
| BUSCO completeness of assembly (%) | 84.8 | 83.2 |
| BUSCO completeness of annotation (%) | 85.0 | 82.4 |
| Number of genes with annotated allelesa | 32,596 | 24,723 |
| Number of genes with two allelesa | 14,691 | |
| Number of genes with one allelea | 27,937 | |
| Total number of anchored genes | 42,628 | |
| Unanchored genes or alleles | 197 | |
aOnly one allele was retained if the two allelic genes had the exact same coding sequences.