Table 1.
Genomic characteristics, host origins and quality of genome assemblies of ten strains classified as novel Limosilactobacillus species
|
|
L. balticus sp. nov. |
L. agrestis sp. nov. |
L. albertensis sp. nov. |
L. rudii sp. nov. |
L. fastidiosus sp. nov. |
|||||
|---|---|---|---|---|---|---|---|---|---|---|
|
BG-AF3-AT |
pH52_RY |
WF-MT5-AT |
BG-MG3-A |
Lr3000T |
RRLNB_1_1 |
STM3_1T |
STM2_1 |
WF-MO7-1T |
WF-MA3-C |
|
|
Host origin |
Yellow-necked mouse (Apodemus flavicollis) |
Pheasant (Phasianus colchicus) |
Field vole (Microtus agrestis) |
Bank vole (Myodes glareolus) |
Hamster |
Red ruffed lemur (Varecia rubra) |
Striped mouse (Rhabdomys pumilio) |
Striped mouse (Rhabdomys pumilio) |
Root vole (Microtus oeconomus) |
Common vole (Microtus arvalis) |
|
GenBank ID |
GCA_014145615.1 |
GCA_014145605.1 |
GCA_014145585.1 |
GCA_014145545.1 |
GCA_014145555.1 |
GCA_014145525.1 |
GCA_014145455.1 |
GCA_014145435.1 |
GCA_014145505.1 |
GCA_014145425.1 |
|
IMG Genome ID |
2860350408 |
2860354513 |
2860352526 |
2860356824 |
2860358791 |
2860361239 |
2860373262 |
2860375653 |
2860378031 |
2860379800 |
|
Genome size (bp) |
2 088 966 |
2 169 741 |
1 899 103 |
1 863 625 |
2 452 361 |
2 354 505 |
2 316 339 |
2 307 466 |
1 720 134 |
1 728 435 |
|
Coverage (×) |
874 |
940 |
937 |
896 |
768 |
1027 |
1194 |
889 |
1121 |
1107 |
|
G+C content (mol%) |
38.3 |
38.2 |
38.0 |
37.9 |
38.8 |
38.5 |
38.5 |
38.5 |
39.1 |
39.1 |
|
No. of contigs |
76 |
94 |
73 |
67 |
78 |
72 |
63 |
61 |
44 |
64 |
|
N50 (bp) |
136 912 |
105 538 |
73 671 |
115 417 |
116 418 |
121 174 |
131 342 |
118 051 |
112 343 |
99 702 |
|
Total genes |
2117 |
2310 |
1986 |
1966 |
2447 |
2383 |
2390 |
2377 |
1768 |
1820 |
|
No. of CDS* |
1992 |
2183 |
1881 |
1845 |
2317 |
2259 |
2247 |
2233 |
1668 |
1718 |
*CDS, coding sequence.