Table 4.
Digital DNA–DNA hybridization values (%) between five novel Limosilactobacillus species, six L. reuteri subspecies and other closely related species in the genus Limosilactobacillus
|
Strain |
L. balticus sp. nov. |
L. agrestis sp. nov. |
L. albertensis sp. nov. |
L. rudii sp. nov. |
L. fastidiosus sp. nov. |
subsp. kinnaridis subsp. nov. |
subsp. porcinus subsp. nov. |
subsp. murium subsp. nov. |
subsp. reuteri subsp. nov. |
subsp. suis subsp. nov. |
subsp. rodentium subsp. nov. |
|||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
BG-AF3-AT |
pH52_RY |
WF-MT5-AT |
BG-MG3-A |
Lr3000T |
RRLNB_1_1 |
STM3_1T |
STM2_1 |
WF-MO7-1T |
WF-MA3-C |
AP3T |
CSF8 |
3c6T |
20–2 |
lpuph1T |
LTH5448 |
DSM 20016T |
MM2-3 |
ATCC 53608T |
pg-3b |
100-23T |
TMW1.656 |
|
|
sp. nov. |
||||||||||||||||||||||
|
BG-AF3-AT |
– |
|||||||||||||||||||||
|
pH52_RY |
89.0 |
– |
||||||||||||||||||||
|
sp. nov. |
||||||||||||||||||||||
|
WF-MT5-AT |
45.0 |
45.2 |
– |
|||||||||||||||||||
|
BG-MG3-A |
45.1 |
45.2 |
91.2 |
– |
||||||||||||||||||
|
sp. nov. |
||||||||||||||||||||||
|
Lr3000T |
25.4 |
25.5 |
24.5 |
25.2 |
– |
|||||||||||||||||
|
RRLNB_1_1 |
25.1 |
25.1 |
24.6 |
25.0 |
77.0 |
– |
||||||||||||||||
|
sp. nov. |
||||||||||||||||||||||
|
STM3_1T |
22.5 |
22.1 |
22.3 |
22.3 |
22.8 |
22.6 |
– |
|||||||||||||||
|
STM2_1 |
22.5 |
22.1 |
22.3 |
22.3 |
22.8 |
22.6 |
100.0 |
– |
||||||||||||||
|
sp. nov. |
||||||||||||||||||||||
|
WF-MO7-1T |
20.5 |
20.4 |
20.6 |
20.8 |
20.5 |
20.2 |
20.8 |
20.8 |
– |
|||||||||||||
|
WF-MA3-C |
20.5 |
20.3 |
20.8 |
20.9 |
20.8 |
20.5 |
20.9 |
20.9 |
98.6 |
– |
||||||||||||
|
subsp. kinnaridis subsp. nov. |
||||||||||||||||||||||
|
AP3T |
52.8 |
53.0 |
42.4 |
42.4 |
25.5 |
25.5 |
22.4 |
22.4 |
20.5 |
20.5 |
– |
|||||||||||
|
CSF8 |
53.6 |
53.1 |
42.5 |
42.8 |
25.3 |
25.0 |
22.4 |
22.4 |
20.4 |
20.4 |
89.7 |
– |
||||||||||
|
L. reuteri subsp. porcinus subsp. nov. |
||||||||||||||||||||||
|
3c6T |
52.2 |
52.3 |
42.9 |
43.0 |
24.7 |
24.7 |
22.3 |
22.3 |
20.6 |
20.6 |
72.0 |
75.5 |
– |
|||||||||
|
20–2 |
51.7 |
51.9 |
42.6 |
43.1 |
25.1 |
24.7 |
22.3 |
22.3 |
20.4 |
21.1 |
71.3 |
74.8 |
95.0 |
– |
||||||||
|
subsp. murium subsp. nov. |
||||||||||||||||||||||
|
lpuph1T |
52.5 |
52.5 |
43.2 |
43.1 |
24.7 |
24.6 |
22.5 |
22.5 |
20.4 |
20.5 |
68.2 |
68.1 |
71.2 |
70.7 |
– |
|||||||
|
LTH5448 |
52.7 |
52.8 |
42.8 |
42.7 |
24.6 |
24.6 |
22.3 |
22.3 |
20.3 |
20.1 |
67.0 |
67.2 |
69.5 |
69.0 |
75.6 |
– |
||||||
|
subsp. reuteri subsp. nov. |
||||||||||||||||||||||
|
DSM 20016T |
54.9 |
54.7 |
43.2 |
43.2 |
24.9 |
24.9 |
22.5 |
22.5 |
20.8 |
20.8 |
65.1 |
68.4 |
70.0 |
70.1 |
71.5 |
72.0 |
– |
|||||
|
MM2-3 |
54.6 |
54.4 |
43.0 |
42.9 |
24.6 |
24.7 |
22.1 |
22.1 |
20.3 |
20.3 |
64.6 |
68.2 |
69.5 |
69.8 |
70.9 |
71.4 |
99.9 |
– |
||||
|
subsp. suis subsp. nov. |
||||||||||||||||||||||
|
ATCC53608T |
57.4 |
57.8 |
43.7 |
43.8 |
25.8 |
25.9 |
22.6 |
22.6 |
21.2 |
21.2 |
65.1 |
64.2 |
62.4 |
62.1 |
65.5 |
65.7 |
68.2 |
68.1 |
– |
|||
|
pg-3b |
57.0 |
57.5 |
43.5 |
43.6 |
24.9 |
24.7 |
22.4 |
22.4 |
20.1 |
20.1 |
63.8 |
64.0 |
64.3 |
64.1 |
65.3 |
67.0 |
70.4 |
70.7 |
94.9 |
– |
||
|
subsp. rodentium subsp. nov. |
||||||||||||||||||||||
|
100-23T |
57.1 |
57.7 |
43.6 |
43.7 |
25.3 |
25.1 |
22.7 |
22.7 |
21.0 |
21.0 |
62.0 |
61.5 |
63.0 |
62.8 |
65.6 |
66.3 |
69.0 |
68.6 |
70.7 |
70.9 |
– |
|
|
TMW1.656 |
58.6 |
58.7 |
42.9 |
42.9 |
24.6 |
24.5 |
22.0 |
22.0 |
19.4 |
19.4 |
61.3 |
61.1 |
63.3 |
63.2 |
65.6 |
66.0 |
67.8 |
67.9 |
70.7 |
69.8 |
80.1 |
– |
|
DSM 4864T |
22.2 |
20.6 |
20.0 |
20.3 |
20.0 |
20.5 |
20.3 |
20.3 |
21.8 |
21.8 |
20.8 |
20.1 |
19.9 |
19.8 |
20.2 |
19.9 |
21.3 |
20.2 |
22.0 |
20.1 |
21.7 |
19.7 |
|
DSM 16041T |
20.2 |
19.8 |
18.9 |
19.1 |
21.1 |
20.5 |
19.7 |
19.7 |
21.9 |
21.8 |
21.1 |
20.1 |
19.7 |
19.9 |
20.4 |
20.3 |
20.8 |
19.8 |
21.1 |
19.9 |
21.3 |
19.7 |
|
DSM 6035T |
19.2 |
19.1 |
19.4 |
19.5 |
19.8 |
19.5 |
20.0 |
20.0 |
21.8 |
21.8 |
19.5 |
19.2 |
19.1 |
18.9 |
19.1 |
19 |
19.7 |
18.8 |
20.1 |
19.3 |
20.2 |
18.9 |
|
L. pontis DSM 8475T |
18.7 |
18.6 |
18.5 |
18.6 |
18.7 |
18.6 |
19.5 |
19.5 |
20.5 |
20.7 |
19.6 |
18.9 |
18.9 |
19.1 |
18.4 |
18.4 |
19.6 |
18.8 |
19.9 |
18.8 |
19.4 |
18.2 |
|
DSM 5837T |
20.6 |
20.5 |
20.9 |
20.9 |
20.9 |
20.7 |
20.7 |
20.7 |
25.0 |
25.3 |
21.6 |
20.8 |
21.0 |
20.8 |
20.7 |
21.1 |
21.7 |
20.6 |
21.2 |
20.1 |
21.9 |
20.6 |
|
DSM 13145T |
20.8 |
20.9 |
20.1 |
20.2 |
20.1 |
19.9 |
20.6 |
20.6 |
20.0 |
20.2 |
20.8 |
20.5 |
19.9 |
19.8 |
20.4 |
20.6 |
21.1 |
19.8 |
21.8 |
20.6 |
23.0 |
19.7 |
|
DSM 14060T |
26.2 |
25.7 |
24.2 |
23.3 |
26.0 |
25.0 |
27.1 |
27.2 |
24.9 |
25.5 |
23.3 |
23.6 |
23.9 |
23.9 |
23.8 |
24.4 |
28.0 |
24.4 |
27.5 |
23.4 |
26.7 |
22.2 |