Table 2.
Interactions and total stabilizing energy in the most dynamic-stable conformation
Items | SARS | SARS-CoV-2 | HP5 | LL37 |
---|---|---|---|---|
H-bond number | 12 (19) | 12 (19) | 9 (13) | 9 (15) |
Salt bridges | 4 | 2 | 1 | 2 |
Electrostatic interactions | 5 (1) | 3 (1) | 5 (4) | 9 (6) |
Hydrophobic interactions | 1 | 1 | 3 | 7 |
van der Waals pairs | 8344 | 8629 | 6681 | 10,365 |
Interface residues | 87 | 93 | 53 | 82 |
H-bond energy (kJ/mol) | − 75.20 | − 80.31 | − 64.10 | − 69.87 |
Electrostatic energy (kJ/mol) | 20.86 | − 8.90 | − 17.16 | − 25.35 |
VdW energy (kJ/mol) | − 243.42 | − 238.42 | − 182.81 | − 252.36 |
Stabilizing energy (kJ/mol) | − 297.76 | − 327.63 | − 264.07 | − 347.58 |
PPCheck server [34] only processes a single conformation. Therefore, no error was encountered in the above data. The number of H-bonds enclosed in brackets means the highest H-bond number that could be formed. Similarly, the electrostatic interactions in brackets suggest the amount of unfavorable electrostatic linkages