Table 1.
The number and proportion of genes with altered DNA methylation.
| Hyper-Methylated DMRs | Hypo-Methylated DMRs | |||||
|---|---|---|---|---|---|---|
| TE-related genes | Non-TE genes | P value (χ2 test) | TE-related genes | Non-TE genes | P value (χ2 test) | |
| Genes | 2963 (8.94%) | 501 (3.97%) | 5.44E72 | 1708 (5.15%) | 353 (2.80%) | 2.32E27 |
| Exon | 1563 (4.72%) | 313 (2.48%) | 5.74E27 | 923 (2.78%) | 245 (1.94%) | 3.78E07 |
| Intron | 1877 (5.66%) | 291 (2.31%) | 2.06E51 | 1202 (3.63%) | 211 (1.67%) | 4.64E27 |
| Promoter 2k | 3050 (9.20%) | 986 (7.81%) | 3.09E06 | 1478 (4.46%) | 500 (3.96%) | 2.08E02 |
| Promoter 2k–5k | 4469 (13.48%) | 1363 (10.80%) | 1.63E14 | 2349 (7.09%) | 843 (6.68%) | 1.32E01 |
| Downstream 2k | 2874 (8.67%) | 696 (5.51%) | 2.86E29 | 1636 (4.94%) | 397 (3.15%) | 1.22E16 |
| Downstream 2k–5k | 3682 (11.11%) | 936 (7.42%) | 1.25E31 | 2025 (6.11%) | 589 (4.67%) | 3.23E09 |