Table 1.

Coronaviridae family contigs description after performing Probe-capture targeted NGS in one urban wastewater sample (March 2020).

Coronaviridae species	Host	Reads	Contigs	Length (bp)	Region	Nt ID (%)	AA ID (%)
SARS-CoV-2	Human	45	8	203	ORF1ab polyprotein	100	100
				217	ORF1ab polyprotein	100	100
				126	ORF1ab polyprotein	100	100
				126	ORF1ab polyprotein	100	100
				178	ORF1ab polyprotein	100	100
				266	ORF3 protein	100	100
				516	Nucleocapsid protein	99.6	99.1
				399	Nucleocapsid protein	99.8	99.3
Betacoronavirus 1 (HCoV OC43)	Human	11	1	235	2’-O-methyltransferase	99.5	98.7
Feline coronavirus	Other vertebrates	33	1	524	ORF1ab polyprotein	91.8	86.5
Lucheng Rn rat coronavirus	Other vertebrates	233	5	354	ORF1ab polyprotein	97.4	97.1
				416	ORF1ab polyprotein	97.0	99.3
				542	ORF1ab polyprotein	97.0	99.4
				848	ORF1ab polyprotein	96.6	96.6
				1129	ORF1ab polyprotein	97.3	99.4
Canine coronavirus	Other vertebrates	14	1	231	ORF1ab polyprotein	96.1	94.8