TABLE 2.
Prior data on HLA-B*15:02 potential tag SNVs.
| SNVs | Population (size) | Tagging ability | Validation methodology | Publication(s) |
|---|---|---|---|---|
| rs10484555 | Diverse (955) | 100% sn, 98.7% sp | Tested against public database | Erlichster et al. (2019) |
| Han Chinese (880) | 100% sn, 99.3% sp | Sequencing | Liu et al. (2015) | |
| rs144012689 | United States (28897) | 100% sn, 99.7% sp | TaqMan SNP genotyping assay | Fang et al. (2019) |
| Han Chinese (184) | 96.7% sn, 99.3% sp | Tested on reference panels | Gui et al. (2018) | |
| rs31451122 | Han Chinese (20635) | n/a | Tested on reference panels | Zhou et al. (2016) |
| rs3909184 | Diverse (160) | 31.8% sn, 80.4% sp | TaqMan SNP genotyping assay | He et al. (2015) |
| Han Chinese (361) | n/a | Tested on reference panels | de Bakker et al. (2006) | |
| rs2844682 | Han Chinese (361) | n/a | Tested on reference panels | de Bakker et al. (2006) |
Sn = sensitivity, sp = specificity, n/a = information that is not available within the publication. Underlined SNVs were selected for technical validation.