Figure EV5. The antibiotic cocktail treatment modulates gut microbiota composition, causing reduced P. aeruginosa and increased A. muciniphila during GIE. Related to Fig 7.

1. Strain diversity (Left, Shannon’s diversity; Right, Chao1 index; Gluten‐free, n = 7; Gluten, n = 6; ABX/gluten, n = 6).
2. The taxonomic composition distributions at phylum (left) and genus (right) levels (Gluten‐free, n = 7; Gluten, n = 6; ABX/gluten, n = 6).
3. Duodenal colonizing P. aeruginosa and A. muciniphila as determined by RT–qPCR using bacterial‐specific species gene primers (n = 6).

Data information: Data in A were representative and were the mean ± SD. Data in C were representative and were the mean ± SD from three independent experiments. P values were calculated by one‐way ANOVA followed by Tukey’s post hoc test for multiple comparisons.

Source data are available online for this figure.