Fig. 4.

Collective expression patterns detected by different methods in Slide-seq data. A Average expression patterns of Vim, Gfap, Ctsd and their correlated genes after 2 weeks brain injury defined by different methods. B Average expression patterns of Vim, Gfap, Ctsd correlated genes detected by CoSTA and not by the indicated methods. C Average expression patterns of Vim, Gfap, Ctsd correlated genes detected by other methods and not CoSTA. D Gene clusters of CoSTA SE genes at 2-week time point on 2 UMAP dimensions. Mean expression patterns are presented for selected clusters. Visualization with raw count values that are scaled from 0 to 1