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. 2021 Aug 10;136:104759. doi: 10.1016/j.compbiomed.2021.104759

Table 1.

Docking result of the 27 selected peptides that showed higher affinity towards RBD of SARS CoV-2 spike protein.

Peptide ID FireDock Score ClusPro 2.0 Score HADDOCK Score
AVP1249 −68.08 −925.6 −94.7 ± 3.4
AVP1757 −66.89 −810.4 −70.1 ± 2.3
AVP1239 −65.64 −751.6 −64.8 ± 4.5
AVP0816 −65.03 −776.1 −79.1 ± 2.5
AVP1191 −63.58 −694 −66.2 ± 5.3
AVP1795 −62.94 −755.9 −81.5 ± 12.8
AVP1794 −60.02 −768.9 −79.6 ± 6.1
AVP1909 −59.9 −843 −74.5 ± 3.9
AVP1871 −59.72 −972.3 −79.3 ± 2.7
AVP1869 −59.66 −702.3 −99.8 ± 4.3
AVP1994 −59.56 −659.1 −49.5 ± 6.9
AVP1754 −59.48 −805.1 −89.4 ± 3.6
AVP1814 −59.14 −674.3 −65.9 ± 4.0
AVP1775 −58.87 −677.5 −78.2 ± 7.7
AVP1860 −58.65 −809.5 −71.5 ± 6.3
AVP1881 −58.37 −798.1 −73.1 ± 6.1
AVP2036 −58.34 N −78.3 ± 5.9
AVP1902 −58.17 N −58.2 ± 8.6
AVP1789 −57.92 −899.2 −77.8 ± 5.7
AVP0767 −57.77 −588.2 −54.3 ± 5.5
AVP0673 −57.74 −883.4 −94.1 ± 3.5
AVP1176 −57.73 −816.1 −71.3 ± 7.9
AVP1844 −57.63 −769.5 −80.0 ± 1.8
AVP1992 −57.6 −784.3 −77.3 ± 2.8
AVP1797 −57.35 −659.8 −77.6 ± 3.1
AVP0748 −57.33 −662.3 −64.4 ± 1.6
AVP1784 −57.12 −863.6 −82.9 ± 3.8
α1 helix of peptidase domain of RBD −36.74 −749.6 −70.2±11.0

N = No desired binding interaction is obtained.