TABLE 1.
Group and parameter | Env PNGS | V1 PNGS | V1 length | V2 PNGS | V2 length | V3 PNGS | V3 length | V4 PNGS | V4 length | V5 PNGS | V5 length |
---|---|---|---|---|---|---|---|---|---|---|---|
RV217, acute | |||||||||||
Min. | 22.89 | 2 | 21 | 0 | 37 | 0 | 34 | 2 | 19 | 0 | 12 |
Q1 | 27.99 | 3.25 | 28.67 | 2 | 40 | 1 | 35 | 4 | 28 | 1 | 13.6 |
Median | 29 | 4 | 33.87 | 2 | 42 | 1 | 35 | 4 | 31 | 1 | 14 |
Mean | 29.07 | 4.23 | 32.96 | 2.2 | 42.41 | 0.98 | 34.83 | 4.28 | 30.48 | 1.43 | 14.76 |
Q3 | 30.58 | 5 | 37 | 2.5 | 44 | 1 | 35 | 5 | 33 | 2 | 15 |
Max. | 34.8 | 8 | 47 | 4 | 51 | 1 | 35 | 6.94 | 40 | 3 | 24 |
RV217, 6 mo | |||||||||||
Min. | 24.7 | 2.38 | 21 | 1 | 37 | 0.95 | 34 | 2 | 20 | 0.1 | 10.4 |
Q1 | 28 | 3.5 | 31 | 1.9 | 40 | 1 | 35 | 3.89 | 28.05 | 1 | 14 |
Median | 29.4 | 4 | 34 | 2 | 41.78 | 1 | 35 | 4.88 | 31 | 1.88 | 14 |
Mean | 29.12 | 4.15 | 32.89 | 2.17 | 42.18 | 1 | 34.85 | 4.39 | 30.81 | 1.52 | 14.71 |
Q3 | 30.3 | 4.9 | 36 | 2.5 | 44 | 1 | 35 | 5 | 33 | 2 | 15 |
Max. | 32.56 | 6.8 | 44 | 3.8 | 51 | 1 | 35 | 6.33 | 38 | 2.7 | 22.07 |
RV144 | |||||||||||
Min. | 23 | 2 | 20.5 | 0 | 37 | 0 | 33.83 | 1.17 | 20 | 0.8 | 12 |
Q1 | 27.07 | 4 | 33 | 1.88 | 40 | 1 | 35 | 3 | 26 | 1 | 13.94 |
Median | 28.25 | 5 | 35 | 2 | 40.5 | 1 | 35 | 4 | 28 | 2 | 15 |
Mean | 28.47 | 4.68 | 35.15 | 2.05 | 42.12 | 0.88 | 35.06 | 3.68 | 27.67 | 1.7 | 15.2 |
Q3 | 29.93 | 5 | 37.19 | 2 | 44.2 | 1 | 35 | 4 | 29.81 | 2 | 16 |
Max. | 34.8 | 6.67 | 47 | 4.9 | 61 | 1 | 36 | 6 | 36.78 | 3 | 28 |
Summary measures of the number of PNGS and loop lengths (expressed as the numbers of amino acids) are provided for HIV-1 sequences from RV217 and RV144 participants. Sequences from RV217 participants were sampled in the first month after HIV-1 diagnosis and 6 months later, sequences from RV144 were obtained within the first 6 months of infection. Min., minimum; Max., maximum.