TABLE 3.

Descriptive statistics of CMB DNA-A species diversity and the relative population-scaled frequencies of mutation and recombination^a

Clade	No. of sequences	π	S	r2, d	LPT P value	ρ	θW	ρ/θW
ACMV	311	0.033	1317	−0.041	0	46	208.54	0.22
SACMV	132	0.014	863	−0.104	0	28	158.17	0.18
EACMV	228	0.057	1249	−0.072	0	6	208.02	0.029
EACMCV	28	0.048	712	−0.176	0	4	182.97	0.022
EACMKV	114	0.043	986	−0.188	0	13	185.72	0.070
EACMZV	18	0.031	352	−0.036	0	2	102.34	0.020
EACMMV	15	0.012	146	−0.01	0.68	0	44.9	NA
SLCMV	19	0.024	349	−0.147	0	2	99.85	0.020
ICMV	10	0.074	533	−0.043	0	4	188.41	0.021

^aπ, nucleotide diversity; average number of pairwise differences per site for samples within a clade. S, number of segregating sites. r², square of the correlation coefficient between sites. d, physical distance. LPT, likelihood permutation test for the presence of recombination. ρ, population-scaled recombination rate. θ_w, Watterson’s infinite-sites estimator of the population-scaled mutation rate (θ).