Table 3.
Summary of publicly available, high-throughput experimental data considered in the current study.
| GEO accession number | Cell line | Virus infection studied after 24 h (along with GSM ids) | Platform considered |
|---|---|---|---|
| GSE147507 | Normal Human Bronchial Epithelial (NHBE) | SARS-CoV-2 (GSM4432381, GSM4432382, GSM4432383), Mock treatment (GSM4432378, GSM4432379, GSM4432380) | Illumina NextSeq 500 (Homo sapiens) |
| GSE153970 | Human airway epithelium (HAE) | SARS-CoV-2 (GSM4661083, GSM4661084, GSM4661085), Mock treatment (GSM4661080, GSM4661081, GSM4661082) | Illumina NovaSeq 6000 (Homo sapiens) |
| GSE47962 | Human airway epithelium (HAE) | SARS-CoV (GSM1163617, GSM1163618, GSM1163619), H1N1 (GSM1163602, GSM1163603, GSM1163604), SARS-CoV-BatSRBD (GSM1163543,GSM1163544), SARS-CoV-dORF6 (GSM1163569, GSM1163570, GSM1163571), Mock treatment (GSM1163650,GSM1163651, GSM1163652) | Agilent-014850 whole human genome microarray 4 × 44 K G4112F |
| GSE49840 | Polarized Calu3 | H7N7 (GSM1208108, GSM1208109, GSM1208110, GSM1208111), H5N1 (GSM1208139, GSM1208140, GSM1208141, GSM1208142), H3N2 (GSM1208124, GSM1208125, GSM1208126, GSM1208127), H7N9 (GSM1208076, GSM1208077, GSM1208078, GSM1208079), Mock treatment (GSM1208092, GSM1208093, GSM1208094, GSM1208095) | Agilent-039494 SurePrint G3 human GE v2 8 × 60 K microarray |
| GSE17400 | Calu3 subclone 2B4 | SARS-CoV (GSM432332, GSM432333, GSM432360), DOHV (GSM432398, GSM432399, GSM432400), Mock treatment (GSM432033, GSM432034, GSM432209) | Affymetrix human genome U133 Plus 2.0 array |
| GSE71766 | Human bronchial epithelial (BEAS-2B) | H1N1 (GSM1844862, GSM1844863, GSM1844864, GSM1844865, GSM1844866), RV16 (GSM1844907, GSM1844908, GSM1844909, GSM1844910, GSM1844911), Control (GSM1844817, GSM1844819, GSM1844820, GSM1844818, GSM1844821), H1N1 + RV16 (GSM1844952, GSM1844953, GSM1844954, GSM1844955, GSM1844956) | Affymetrix human genome U219 array |
| GSE48575 | Normal human bronchial epithelial cells (NHBECs) | H1N1pdm (GSM1181433, GSM1181434, GSM1181435), sH1N1 (GSM1181442, GSM1181443, GSM118144), Control for H1N1pdm (GSM1181427, GSM1181428, GSM1181429), Control for sH1N1(GSM1181436, GSM1181437, GSM1181438) | Illumina Human HT-12 V4.0 expression beadchip |
| GSE150819 | Human bronchial organoids | Uninfected human bronchial organoid (GSM4559193, GSM4559194, GSM4559195), SARS-CoV-2 infected human bronchial organoid (GSM4559196, GSM4559197, GSM4559198) | Illumina NovaSeq 6000 |