Table 1.
GWAS results for genes associated with different traits
| Trait | Gene locus | Exon | SNP sites | Protein | −Log10(P) | Gene annotation |
|---|---|---|---|---|---|---|
| Leaf color | TEA012477 | 15 | CGT (1826)–GAT | Arg (609)–His | 1.16718 | Calmodulin-binding transcription activator 2 |
| 18 | TCC (3406)–GCC | Ser (1136)–Ala | 0.93987 | |||
| 20 | ATA (4184)–ACA | Ile (1394)–Thr | 8.43856 | |||
| TEA028016 | 2 | TAC (175)–GAC | Tyr (59)–His | 6.21486 | Cop1 ubiquitin ligase complex | |
| 5 | CGA (574)-CTA | Arg (192)–Leu | 6.21486 | |||
| Density of leaf serration | TEA025567 | 4 | GAA (428)–GCA | Glu (143)–Ala | 8.90128 | Tetratricopeptide repeat (TPR) protein |
| Depth of leaf serration | TEA017338 | 3 | GTC (657)–GTT | Ser (107)–Phe | 7.32429 | AT-rich interactive domain protein |
| Plant type | TEA029928 | 1 | GGC (532)–AGT | Gly (178)–Ser | 8.08721 | F-box protein |
| TEA012294 | 1 | CTG (475)–TGT | Gly (159)–Glu | 8.46766 | Acyl carrier protein 2 |