REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Bacterial and Virus Strains | ||
B21(DE3) E. coli | Lab stock | N/A |
Chemicals, Peptides, and Recombinant Proteins | ||
KatG recombinant protein | Lab | N/A |
Hemin chloride | Sigma-Aldrich | H9039 |
5-Aminolevulinic acid hydrochloride | Sigma-Aldrich | A3785 |
Hydrogen Peroxide Solution | Sigma-Aldrich | H1009 |
Deposited Data | ||
WT KatG structure | This paper | PDB: 6ZJI |
WT KatG Cryo-EM map | This paper | EMDB: 11234 |
WT KatG +INH structure | This paper | PDB: 7AG8 |
WT KatG +INH Cryo-EM map | This paper | EMDB: 11776 |
T275P structure | This paper | PDB: 7A8Z |
T275P Cryo-EM map | This paper | EMDB: 11680 |
T275P +Heme structure | This paper | PDB: 7AA3 |
T275P +Heme Cryo-EM map | This paper | EMDB: 11689 |
W107R structure | This paper | PDB: 7A2I |
W107R Cryo-EM map | This paper | EMDB: 11625 |
W107R + Heme (1 heme) structure | This paper | PDB: 7A7C |
W107R + Heme (1 heme) Cryo-EM map | This paper | EMDB: 11677 |
W107R + Heme (2 heme) structure | This paper | PDB: 7A7A |
W107R + Heme (2 heme) Cryo-EM map | This paper | EMDB: 11676 |
The crystal structure of KatG from Mycobacterium tuberculosis. | Zhao et al., 2006 | PDB: 2CCA |
The crystal structure of Isoniazid bound KatG from Synechococcus elongatus. | Kamachi et al., 2015a, 2015b | PDB: 3WXO |
Oligonucleotides | ||
T275P KatG Forward primer 5’-ACCTTTGGTAAACCACATGGTGCAGGT-3’ |
This paper | N/A |
T275P KatG Reverse primer 5’-ACCTGCACCATGTGGTTTACCAAAGGT-3’ |
This paper | N/A |
W107R KatG Forward primer 5’-TGCTGCATGCCGTGCCATACGAATAAACAGCGG-3’ |
This paper | N/A |
W107R KatG Reverse primer 5’-CCGCTGTTTATTCGTATGGCACGGCATGCAGCA-3’ |
This paper | N/A |
Recombinant DNA | ||
W107R – pET28a plasmid | This paper | N/A |
T275P – pET28a plasmid | This paper | N/A |
WT – pET28a plasmid | This paper | N/A |
Software and Algorithms | ||
Warp | Tegunov and Cramer, 2019 | http://www.warpem.com/warp/ |
CryoSPARC | Punjani et al., 2017a, Punjani et al., 2017b | https://cryosparc.com |
Coot | Emsley et al., 2010 | https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/ |
PHENIX Real-space refinement | Afonine et al., 2018b | https://www.phenix-online.org/documentation/reference/real_space_refine.html |
Fragment Hotspot Maps | Radoux et al., 2016 | http://fragment-hotspot-maps.ccdc.cam.ac.uk/ |
Namdinator | Kidmose et al., 2019 | https://namdinator.au.dk |
UCSF chimera | Pettersen et al., 2004 | https://www.cgl.ucsf.edu/chimera/download.html |