TABLE 5.
Detail information of lncRNAs and mRNAs with hyper- and hypo-methylation detected by m6A single-base site qPCR.
| GeneSymbol | Transcript_ID | Position | Sequence context | Score | Decision |
|---|---|---|---|---|---|
| LOC103693543 | XR_595034 | 1359 | GAGAG AUCUA CUGAA | 0.674 | m6A site (very high confidence) |
| CAUCU GGACA ACCUC | |||||
| ACAUC AUACC AUCUC | |||||
| LOC102552786 | XR_346771 | 1712 | GGUCC UCCAA UGAAU | 0.707 | m6A site (very high confidence) |
| UCAAA GGACA AUAGG | |||||
| CGACC ACCAG UGAAU | |||||
| LOC102547952 | XR_338486 | 1546 | CUGCA ACAUG GGAAG | 0.676 | m6A site (very high confidence) |
| AAGAG GGACA UAAGA | |||||
| GAGGA CCCCA CCCCC | |||||
| LOC102548402 | XR_596592 | 3965 | AUCUG ACGGC AGGAU | 0.677 | m6A site (very high confidence) |
| UUGGA GGACA CCUCU | |||||
| GAAAG GGCCC CAGAA | |||||
| Clec1b | ENSRNOT00000082537 | 831 | ACCCA GCTTC CTGTA CAGAG AGACA TTACT TAATA TGTGA GAGAA | 0.731 | m6A site (very high confidence) |
| Tnfrsf26 | ENSRNOT00000066943 | 416 | CAGGA ATGCA ATGCC ACAAT GGACA CTGTG TGTGA CTCCA AGCAA | 0.634 | m6A site (high confidence) |
| Ptk2b | ENSRNOT00000030007 | 3278 | GTGCT ACTTG GGCTA CATCT GGACA GAAAG GACTC TGGGC ACAGA | 0.732 | m6A site (very high confidence) |
| Tnfrsf21 | ENSRNOT00000015918 | 928 | CTGGG GTGTG AGGAA GAAAG GGACA GAGAA TGAAG ATGTG CGGTG | 0.747 | m6A site (very high confidence) |
| Stk38l | NM_001083336 | 2090 | ACCGG CTGCA AGGAA CTTAA GGACA CTGACTCCGA CATTA GAATT | 0.640 | m6A site (high confidence) |
| Ankrd54 | ENSRNOT00000014413 | 1173 | CCCTC TGGCT GTTAG GGAAG GGACA GGAAC CCCAG AACAG AGGAA | 0.643 | m6A site (high confidence) |