TABLE 1.
RNA sequencing statistics.
| Sample | Total raw reads (M)a | Total clean reads (M)b | Clean reads Q30 (%)c | Total mapping (%)d | Uniquely mapping (%)e |
| XS11_1 | 49.08 | 44.78 | 85.28 | 90.91 | 62.83 |
| XS11_2 | 47.33 | 43.51 | 85.91 | 90.97 | 63.23 |
| XS11_3 | 47.33 | 43.18 | 85.19 | 91.06 | 62.48 |
| XS11-NO3_1 | 47.33 | 43.84 | 88.12 | 91.75 | 68.26 |
| XS11-NO3_2 | 47.33 | 43.89 | 87.94 | 91.54 | 68.03 |
| XS11-NO3_3 | 45.57 | 42.09 | 87.51 | 91.49 | 66.78 |
| XS11-NH4_1 | 47.33 | 43.45 | 86.4 | 91.15 | 67.39 |
| XS11-NH4_2 | 47.33 | 43.42 | 86.44 | 91.06 | 66.66 |
| XS11-NH4_3 | 47.33 | 43.49 | 86.42 | 91.22 | 66.8 |
aNumber of reads generated from the BGISEQ-500.
bRaw data with low-quality reads, reads containing 3’ adaptors, and reads containing two or more N bases removed.
cPercentage of bases with a mass value > 30.
dNumber of reads mapped to the reference genome within 2-bp mismatch.
eUniquely mapped = the number of reads mapped to the reference genome with unique sequence location.