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. 2021 Jul 28;12:712701. doi: 10.3389/fmicb.2021.712701

TABLE 1.

RNA sequencing statistics.

Sample Total raw reads (M)a Total clean reads (M)b Clean reads Q30 (%)c Total mapping (%)d Uniquely mapping (%)e
XS11_1 49.08 44.78 85.28 90.91 62.83
XS11_2 47.33 43.51 85.91 90.97 63.23
XS11_3 47.33 43.18 85.19 91.06 62.48
XS11-NO3_1 47.33 43.84 88.12 91.75 68.26
XS11-NO3_2 47.33 43.89 87.94 91.54 68.03
XS11-NO3_3 45.57 42.09 87.51 91.49 66.78
XS11-NH4_1 47.33 43.45 86.4 91.15 67.39
XS11-NH4_2 47.33 43.42 86.44 91.06 66.66
XS11-NH4_3 47.33 43.49 86.42 91.22 66.8

aNumber of reads generated from the BGISEQ-500.

bRaw data with low-quality reads, reads containing 3’ adaptors, and reads containing two or more N bases removed.

cPercentage of bases with a mass value > 30.

dNumber of reads mapped to the reference genome within 2-bp mismatch.

eUniquely mapped = the number of reads mapped to the reference genome with unique sequence location.