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Overlap (%) between random-, FST-, or effect-preselected marker subsets and G2 SNPs
| Selection methoda | Number of preselected SNPs (in thousands) | |||||
|---|---|---|---|---|---|---|
| 1 | 10 | 20 | 30 | 40 | 50 | |
| Random | 6.75 | 6.65 | 6.63 | 6.64 | 6.63 | 6.69 |
| FST | 99.99 | 67.04 | 47.19 | 37.84 | 32.26 | 28.45 |
| Effect | 100.00 | 76.07 | 54.13 | 43.13 | 36.42 | 31.89 |
a SNPs were preselected either randomly, based on their FST scores, or based on the absolute value of their estimated effect
