TABLE 3.

Top 20 enriched biological processes (Gene Ontology) in the final network.

Rank	Name	p value	Matched	Gene set
1	Cytokine-mediated signaling pathway	1.04E-71	116	279
2	Inflammatory response	1.49E-46	100	381
3	Membrane organisation	4.63E-44	66	133
4	Immune response	9.65E-42	85	297
5	Viral entry into host cell	1.83E-36	51	89
6	Innate immune response	2.40E-36	94	457
7	Positive regulation of interleukin-6 production	1.71E-30	45	89
8	Cellular response to lipopolysaccharide	6.86E-29	53	157
9	Defense response to virus	1.04E-28	58	200
10	Positive regulation of NF-kappaB transcription factor activity	7.07E-27	51	160
11	Response to virus	1.67E-25	42	104
12	Positive regulation of interleukin-8 production	1.40E-22	31	54
13	Endocytosis	3.11E-22	48	184
14	Positive regulation of I-kappaB kinase/NF-kappaB signaling	3.78E-22	48	185
15	Signal transduction	2.14E-21	108	1,006
16	Positive regulation of tyrosine phosphorylation of STAT protein	2.92E-21	32	68
17	Type I interferon signaling pathway	8.02E-20	30	65
18	I-kappaB kinase/NF-kappaB signaling	1.12E-19	30	66
19	Chemokine-mediated signaling pathway	1.57E-19	30	67
20	Positive regulation of tumor necrosis factor production	1.78E-19	27	49