TABLE 1.
Binning sources, similarity statistics, and general genomics features for the genomes analyzed in this study
| Genus and bin names | Binning source | Similarity statistics |
Binned genome size (Mbp) | Estimated genome size (Mbp) | % Protein coding bases | GC content (%) | No. of CRISPRs | Avg gene length (bp) | Total no. of genes | Total no. of protein coding genes | Accession no. | Reference(s) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AAI (avg ± SD) | SGC (avg ± SD) | ||||||||||||
| Genus Ga0212092 | |||||||||||||
| 3300022548-MAG_0657 | Cone Pool hot spring mat layer | 54.09 ± 0.98 | 40.34 ± 5.3 | 3.74 | 4.33 | 90.08 | 65.68 | 5 | 1,021 | 3,349 | 3,303 | Ga0212092a | —c |
| 3300017429_3 | 3.82 | 4.56 | 90.05 | 65.60 | 4 | 1,018 | 3,424 | 3,376 | Ga0185343a | — | |||
| Genus QHZH01 | |||||||||||||
| QHZH01 | Angelo Reserve soil | 54.63 ± 5.62 | 35.97 ± 5.12 | 6.00 | 8.01 | 90.41 | 66.73 | 2 | 895 | 6,088 | 6,058 | QHZH01b | 30 |
| Genus Gp18_AA60 | |||||||||||||
| QHZE01 | Angelo Reserve soil | 55.32 ± 5.08 | 37.1 ± 4.46 | 7.54 | 8.12 | 84.85 | 58.70 | 18 | 985 | 6,542 | 6,497 | QHZE01b | 30 |
| QHZF01 | 7.06 | 8.42 | 84.49 | 58.85 | 25 | 916 | 6,546 | 6,508 | QHZF01b | 30 | |||
| QHZG01 | 7.33 | 7.65 | 84.45 | 58.87 | 31 | 980 | 6,360 | 6,314 | QHZG01b | 30 | |||
| Genus UBA6911 | |||||||||||||
| 3300026311_10 | Anaerobic biogas reactor | 53.59 ± 4.66 | 38.83 ± 7.76 | 4.38 | 4.71 | 92.16 | 56.50 | 3 | 1,002 | 4,076 | 4,029 | Ga0209723a | 78 |
| 3300009760_11 | Peatland | 3.10 | 5.17 | 84.98 | 52.10 | 0 | 827 | 3,218 | 3,184 | Ga0116131a | 76, 77 | ||
| 3300017998_12 | 4.18 | 5.15 | 87.18 | 52.70 | 4 | 866 | 4,262 | 4,211 | Ga0187870a | 76, 77 | |||
| 3300025472_6 | 4.15 | 5.61 | 86.20 | 52.60 | 4 | 838 | 4,309 | 4,267 | Ga0208692a | 76, 77 | |||
| 3300018015_9 | 4.69 | 5.91 | 87.26 | 52.80 | 2 | 831 | 4,956 | 4,923 | Ga0187866a | 76, 77 | |||
| 3300027917_55 | White Oak River sediment | 3.87 | 4.43 | 84.76 | 48.90 | 9 | 898 | 3,695 | 3,656 | Ga0209536a | 40 | ||
| GCA_002451015 | Noosa River | 4.94 | 5.72 | 85.35 | 51.60 | 1 | 911 | 4,657 | 4,632 | DKBB01b | 79 | ||
| Zgenome_0255 | Zodletone Spring sediment | 3.75 | 5.12 | 87.68 | 57.60 | 19 | 987 | 3,252 | 3,220 | JAFGAO01b | This study | ||
| Zgenome_240 | 6.51 | 6.81 | 87.10 | 52.30 | 5 | 1,011 | 5,666 | 5,615 | JAFGIY01b | This study | |||
| Zgenome_95 | 5.45 | 5.85 | 86.79 | 51.80 | 7 | 987 | 4,835 | 4,791 | JAFGTD01b | This study | |||
| Genus Ga0209509 | |||||||||||||
| 3300009770_26 | Anaerobic biogas reactor | 54.58 ± 3.99 | 40.93 ± 8.14 | 2.50 | 2.70 | 90.94 | 65.20 | 1 | 1,008 | 2,291 | 2,253 | Ga0123332a | 78 |
| 3300009773_26 | 2.56 | 2.75 | 90.73 | 65.20 | 2 | 1,006 | 2,346 | 2,307 | Ga0123333a | 78 | |||
| 3300026194_8 | 3.76 | 3.88 | 91.48 | 66.60 | 2 | 1,035 | 3,370 | 3,326 | Ga0209509a | 78 | |||
| 3300026195_8 | 3.83 | 3.95 | 91.56 | 66.50 | 5 | 1,041 | 3,418 | 3,371 | Ga0209312a | 78 | |||
| 3300026198_13 | 2.52 | 2.82 | 91.52 | 65.70 | 1 | 997 | 2,344 | 2,310 | Ga0209313a | 78 | |||
| 3300026250_9 | 3.75 | 3.87 | 91.48 | 66.60 | 3 | 1,040 | 3,348 | 3,300 | Ga0209612a | 78 | |||
| 3300026252_8 | 3.75 | 3.86 | 91.47 | 66.60 | 2 | 1,041 | 3,337 | 3,291 | Ga0209722a | 78 | |||
| 3300026255_14 | 2.70 | 2.91 | 91.17 | 65.60 | 2 | 999 | 2,502 | 2,465 | Ga0209613a | 78 | |||
| 3300026290_9 | 3.86 | 3.98 | 91.35 | 66.20 | 3 | 1,045 | 3,425 | 3,376 | Ga0209510a | 78 | |||
| 3300026311_36 | 2.69 | 2.78 | 90.30 | 64.90 | 3 | 1,004 | 2,466 | 2,423 | Ga0209723a | 78 | |||
| Zgenome_919 | Zodletone Spring sediment | 4.75 | 4.98 | 91.97 | 66.50 | 0 | 996 | 3,038 | 3,001 | JAFGSS01b | This study | ||
a
Accession number corresponds to Gold analysis project number (for MAGs from the recently released 52,515 genomes in the Earth microbiome catalogue collection [76] that were deposited in the IMG/M database).
b
NCBI (WGS Project) assembly accession number.
c
—, unpublished, used with the principal investigator’s permission.