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. 2021 Mar 31;70(5):961–975. doi: 10.1093/sysbio/syab024

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© The Author(s) 2021. Published by Oxford University Press, on behalf of the Society of Systematic Biologists.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercialre-use, please contact journals.permissions@oup.com

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Figure 3. — Phylogenetic trees based on genome-wide SNVs. a) NJ tree based on 30,094,655 concatenated autosomal SNVs; b) ML tree estimated with IQTREE based on 1,875,938 concatenated autosomal SNVs without missing genotypes; c) ML tree estimated with RAxML based on 40,980 concatenated autosomal SNVs without missing genotypes and with a genotype depth 10. Asterisks represent 100% bootstrap support.

Inline graphic — Phylogenetic trees based on genome-wide SNVs. a) NJ tree based on 30,094,655 concatenated autosomal SNVs; b) ML tree estimated with IQTREE based on 1,875,938 concatenated autosomal SNVs without missing genotypes; c) ML tree estimated with RAxML based on 40,980 concatenated autosomal SNVs without missing genotypes and with a genotype depth 10. Asterisks represent 100% bootstrap support.