. 2021 Feb 22;70(5):1046–1060. doi: 10.1093/sysbio/syab010

Table 4.

Likelihood comparisons between Q.pfam, Q.plant, Q.bird, Q.mammal, Q.insect, and Q.yeast

Compared model	Q.pfam is better	Compared model is better
Q.plant	4 (1)	304 (288)
Q.bird	468 (110)	5827 (5106)
Q.mammal	94 (24)	3068 (2872)
Q.insect	222 (62)	1646 (1291)
Q.yeast	72 (25)	1336 (1227)

Note: The second column shows the number of alignments having higher likelihood with Q.pfam than the comparing model and the number of alignments with significantly higher likelihood in parentheses (AU test, Inline graphic ). The third column shows the number of alignments where the compared model has higher likelihood than Q.pfam, with the number of significant cases in parentheses.