TABLE 3.
Total number of haplotype alleles, haploblocks, and the non_blocked SNPs from the 770K array and sequence data.
| Data | r 21 | Haplotype alleles | Haploblocks (Blocked_SNPs) | Number of SNPs per haploblock | Non_blocked SNPs |
| 770K | 0.2 | 840,676 | 68,775 (362,710) | 5.3 | 298,454 |
| 0.3 | 599,270 | 66,027 (309,126) | 4.7 | 352,038 | |
| 0.4 | 462,287 | 62,150 (268,055) | 4.3 | 393,109 | |
| 0.5 | 371,074 | 58,009 (234,305) | 4.0 | 426,859 | |
| 0.6 | 303,774 | 53,876 (204,725) | 3.8 | 456,439 | |
| 0.7 | 249,195 | 49,320 (176,622) | 3.6 | 484,542 | |
| 0.8 | 199,702 | 43,892 (147,008) | 3.3 | 514,156 | |
| WGS | 0.2 | 3,370,157 | 634,662 (3,536,404) | 5.6 | 3,240,315 |
| 0.3 | 2,701,350 | 601,761 (3,142,601) | 5.2 | 3,634,118 | |
| 0.4 | 2,323,965 | 571,908 (2,877,612) | 5.0 | 3,899,107 | |
| 0.5 | 2,067,572 | 545,069 (2,676,430) | 4.9 | 4,100,289 | |
| 0.6 | 1,866,317 | 522,099 (2,502,764) | 4.8 | 4,273,955 | |
| 0.7 | 1,684,138 | 500,294 (2,329,147) | 4.7 | 4,447,572 | |
| 0.8 | 1,493,399 | 477,242 (2,123,952) | 4.5 | 4,652,767 |
1Seven different LD thresholds set from r2 ≥ 0.2 to r2 ≥ 0.8.