TABLE 4.
P-values of Hotelling’s t-test comparing the prediction accuracy obtained with the individual SNP and haploblock approaches using 770K data.
| r 21 | GHBLUP_770K |
GHBLUP+GBLUP_770K |
||||
| DP | MP | RERW | DP | MP | RERW | |
| 0.2 | 0.102 | 0.315 | 0.462 | 0.097 | 0.211 | 0.931 |
| 0.3 | 0.147 | 0.295 | 0.352 | 0.089 | 0.342 | 0.994 |
| 0.4 | 0.299 | 0.198 | 0.113 | 0.052 | 0.292 | 0.719 |
| 0.5 | 0.101 | 0.213 | 0.161 | 0.019 | 0.167 | 0.811 |
| 0.6 | 0.293 | 0.400 | 0.221 | 0.013 | 0.150 | 0.864 |
| 0.7 | 0.367 | 0.188 | 0.274 | 0.026 | 0.240 | 0.837 |
| 0.8 | 0.288 | 0.102 | 0.065 | 0.015 | 0.059 | 0.391 |
1Seven different LD thresholds set from r2 ≥ 0.2 to r2 ≥ 0.8.