| Dataset | Cell type | # Sig PCs | Used PCs | k-NN |
|---|---|---|---|---|
| Optimization | All cells | 13 | 15 | 250 (Phenograph) |
| Mouse colon (plate) | All cells | 16 | 30 | 250 (Phenograph) |
| Mouse colon (plate) | Neurons | 15 | 30 | 15 (Phenograph) |
| Mouse colon (plate) | Glia | 9 | 15 | 500 (Phenograph) |
| Mouse colon (droplet) | All cells | 19 | 30 | 10 (Leiden) |
| Mouse colon (droplet) | Neurons | 13 | 30 | 25 (Phenograph) |
| Mouse colon (droplet) | Glia | 6 | 15 | 750 (Phenograph) |
| Mouse ileum (droplet) | All cells | 20 | 30 | 10 (Leiden) |
| Mouse ileum (droplet) | Neurons | 10 | 30 | 10 (Phenograph) |
| Mouse ileum (droplet) | Glia | 9 | 15 | 250 (Phenograph) |
| Human colon (droplet) | All cells | 20 | 30 | 10 (Leiden) |
| Human colon (droplet) | Neurons | 7 | 30 | 25 (Phenograph) |
| Human colon (droplet) | Glia | 8 | 15 | 750 (Phenograph) |
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