TABLE 2.
GenBank No. | Strain | Partial nucleotide sequence encompassing the STR in IGR between I73R and I329L * | Type |
---|---|---|---|
MT300324 | Korea/19S3965/wb/2019 | GCAATAAATAACAAGTATATAGGAATATATAGGAATATATAGAAATATATAGAAATAGCTAA | IGR I |
FR682485 | Georgia 2007/1 | GCAATAAATAACAAGTATATAGGAATATATAGGAATATATAGAAATATATAGAAATAGCTAA | |
KY982843 | Russia/Irkutsk/2017/Domestic pig | GCAATAAATAACAAGTATATAGGAATATATAGGAATATATAGAAATATATAGAAATAGCTAA | |
MK189457 | China/Jilin/2018/boar | GCAATAAATAACAAGTATATAGGAATATATAGGAATATATAGAAATATATAGAAATAGCTAA | |
MG939584 | Poland/Pol16/2016/wb | GCAATAAATAACAAGTATATAGGAATATATAGGAATATATAGAAATATATAGAAATAGCTAA | |
KP137637 | Russia/Volgograd/wb/2014 | GCAATAAATAACAAGTATATAGGAATATATAGGAATATATAGGAATATATAGAAATATATAGAAATAGCTAA | IGR II |
MH998359 | Belgium/Etalle/wb/2018 | GCAATAAATAACAAGTATATAGGAATATATAGGAATATATAGGAATATATAGAAATATATAGAAATAGCTAA | |
MH735144 | China/2018/Domestic pig | GCAATAAATAACAAGTATATAGGAATATATAGGAATATATAGGAATATATAGAAATATATAGAAATAGCTAA | |
MN603969 | Korea/2019/Domestic pig | GCAATAAATAACAAGTATATAGGAATATATAGGAATATATAGGAATATATA GAAATATATAGAAATAGCTAA | |
MN817979 * | Korea/19S804/wb/2019 | GCAATAAATAACAAGTATATAGGAATATATAGGAATATATAGGAATATATAGAAATATATAGAAATAGCTAA | |
MK670729 | China/Guangxi/2019/Domestic pig | GCAATAAATAACAAGTATATAGGAATATATAGGAATATATAGGAATATATAGGAATATATAGAAATATATAGAAATAGCTAA | IGR III |
MT300325 | Korea/19S5464/wb/2019 | GCAATAAATAACAAGTATATAGGAATATATAGGAATATATAGGAATATATAGGAATATATAGAAATATATAGAAATAGCTAA |
The nucleotide sequences obtained in this study (bold sequences) were compared to those of other African swine fever virus (ASFV) strains representing each IGR genotype. Of the 56 ASFV sequences, 54 sequences, excluding the 19S3965 and 19S5464 isolates, were represented by the pre‐existing Korea/19S804/wb/2019 isolate (marked with asterisk), showing 100% identity. The 10‐bp STR unit (5′‐GGAATATATA‐3′) is underlined.