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. 2020 Nov 6;68(4):1726–1730. doi: 10.1111/tbed.13867

TABLE 2.

Comparison of intergenic region (IGR) sequences between I73R and I329L encompassing a short tandem repeat (STR)

GenBank No. Strain Partial nucleotide sequence encompassing the STR in IGR between I73R and I329L * Type
MT300324 Korea/19S3965/wb/2019 GCAATAAATAACAAGTATATAGGAATATATAGGAATATATAGAAATATATAGAAATAGCTAA IGR I
FR682485 Georgia 2007/1 GCAATAAATAACAAGTATATAGGAATATATAGGAATATATAGAAATATATAGAAATAGCTAA
KY982843 Russia/Irkutsk/2017/Domestic pig GCAATAAATAACAAGTATATAGGAATATATAGGAATATATAGAAATATATAGAAATAGCTAA
MK189457 China/Jilin/2018/boar GCAATAAATAACAAGTATATAGGAATATATAGGAATATATAGAAATATATAGAAATAGCTAA
MG939584 Poland/Pol16/2016/wb GCAATAAATAACAAGTATATAGGAATATATAGGAATATATAGAAATATATAGAAATAGCTAA
KP137637 Russia/Volgograd/wb/2014 GCAATAAATAACAAGTATATAGGAATATATAGGAATATATAGGAATATATAGAAATATATAGAAATAGCTAA IGR II
MH998359 Belgium/Etalle/wb/2018 GCAATAAATAACAAGTATATAGGAATATATAGGAATATATAGGAATATATAGAAATATATAGAAATAGCTAA
MH735144 China/2018/Domestic pig GCAATAAATAACAAGTATATAGGAATATATAGGAATATATAGGAATATATAGAAATATATAGAAATAGCTAA
MN603969 Korea/2019/Domestic pig GCAATAAATAACAAGTATATAGGAATATATAGGAATATATAGGAATATATA GAAATATATAGAAATAGCTAA
MN817979 * Korea/19S804/wb/2019 GCAATAAATAACAAGTATATAGGAATATATAGGAATATATAGGAATATATAGAAATATATAGAAATAGCTAA
MK670729 China/Guangxi/2019/Domestic pig GCAATAAATAACAAGTATATAGGAATATATAGGAATATATAGGAATATATAGGAATATATAGAAATATATAGAAATAGCTAA IGR III
MT300325 Korea/19S5464/wb/2019 GCAATAAATAACAAGTATATAGGAATATATAGGAATATATAGGAATATATAGGAATATATAGAAATATATAGAAATAGCTAA
*

The nucleotide sequences obtained in this study (bold sequences) were compared to those of other African swine fever virus (ASFV) strains representing each IGR genotype. Of the 56 ASFV sequences, 54 sequences, excluding the 19S3965 and 19S5464 isolates, were represented by the pre‐existing Korea/19S804/wb/2019 isolate (marked with asterisk), showing 100% identity. The 10‐bp STR unit (5′‐GGAATATATA‐3′) is underlined.