Skip to main content
. 2021 Aug 9;31(15):3409–3418.e6. doi: 10.1016/j.cub.2021.05.023
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

GFP Monoclonal (GF28R) Thermo Fisher Scientific/Invitrogen Cat# MA5-15256
GFP Polyclonal Thermo Fisher Scientific/Invitrogen Cat# A11122; RRID: AB_221569
Phospho-myosin light chain 2 (S19) Cell Signaling Cat# 3671; RRID: AB_330248
Cleaved Caspase-3 (Asp175) Cell Signaling Cat# 9661; RRID: AB_2341188
C-cadherin Developmental Studies Hybridoma Bank 6B6
Phospho-ERK1/2 Sigma Aldrich Cat# E7028; RRID: AB_259347
ERK1/2 Cell Signaling Cat# 9102S; RRID: AB_330744
α-tubulin Sigma Aldrich Cat# T9026; RRID: AB_477593
Alexa Fluor 488 goat anti-mouse Thermo Fisher Scientific/Invitrogen Cat# A11001; RRID: AB_2534069
Alexa Fluor 568 goat anti-mouse Thermo Fisher Scientific/Invitrogen Cat# A11004; RRID: AB_2534072
Alexa Fluor 488 goat anti-rabbit Thermo Fisher Scientific/Invitrogen Cat# A11008; RRID: AB_143165
Alexa Fluor 568 goat anti-rabbit Thermo Fisher Scientific/Invitrogen Cat# A11011; RRID: AB_143157
Alexa Fluor 568 Tyramide Reagent Thermo Fisher Scientific/Invitrogen Cat# B40956
Goat anti-Rabbit IRDye800CW Abcam Cat# 216773
donkey anti-mouse IRDye680RD Abcam Cat# 216778

Bacterial and virus strains

Subcloning Efficiency DH5α Competent Cells Thermo Fisher Scientific 18265017

Chemicals, peptides, and recombinant proteins

PMSG-Intervet (Pregnant Mare Serum Gonadotrophin) Intervet UK N/A
Chorulon (Human Chorionic Gonadotrophin) Intervet UK N/A
MS222 – Ethyl 3-aminobenzoate methanesulfonate salt Merck A5040-100G
Phenol:Chloroform:IAA, 25:24:1 Thermo Fisher Scientific AM9730
L-cysteine Sigma Aldrich 168149
Ficoll Sigma Aldrich PM400
Protease inhibitor cocktail Promega G6521
PhosSTOP phosphatase inhibitor Sigma Aldrich 4906845001
DAPI Thermo Fisher Scientific D1306
NotI New England Biolabs R0189L

Critical commercial assays

mMessage mMachine SP6 transcription kit Thermo Fisher Scientific AM1340
PureLink Quick Plasmid Miniprep Kit Thermo Fisher Scientific K210010

Experimental models: Organisms/strains

Mature female Xenopus laevis Bred in-house and from European Xenopus Resource Centre (EXRC). https://xenopusresource.org/
Mature male Xenopus laevis Bred in-house and from European Xenopus Resource Centre (EXRC). https://xenopusresource.org/

Oligonucleotides

Morpholino: MHC-B (Myosin Heavy Chain-B, myosin II) 5′-CTTCCTGCCCTGGTCTCTGTGACAT-3′ Gene Tools LLC60 N/A
Morpholino: Standard control 5′-CCTCTTACCTC
AGTTACAATTTATA-3′
Gene Tools LLC Product name “Standard Control oligo”
kRasV12FwdBspEI: 5′-CTGATCCGGAATGACTGAATATAAACTTGT-3′ Eurogentec N/A
kRasV12RvsXhoI: 5′-GCTACTCGAGTTACATAATTACACACTTTG-3′ Eurogentec N/A
MycFwdBspEI: 5′-AATATCCGGAATGCCCCTCA-3′ Eurogentec N/A
MycRvsXhoI: 5′-ATACCTCGAGTTACGCACAAGAGTTC-3′ Eurogentec N/A

Recombinant DNA

mCherry-Histone2B in pCS2+ Kanda et al.66 N/A
BFP-CAAX in pCS2+ Bement Lab, University of Wisconsin-Madison.67 N/A
N-GFP in pCS2+ Bement Lab, University of Wisconsin-Madison68 N/A
GFP-kRasV12 in pCS2+ Human kRasV12 from Addgene cloned into N-GFP/pCS2+ Addgene 2544
GFP-cMYC in pCS2+ Human cMYC-IRES-GFP from Addgene cloned into N-GFP/PCS2+. Addgene 8119
GFP-RhoAQ63L in pcDNA3 Addgene Addgene 12968
mCherry-UtrCH in pCS2+ Bement Lab, University of Wisconsin-Madison68 N/A

Software and algorithms

Fiji/ImageJ Version 2.0.0-rc-69/1.53a NIH https://imagej.nih.gov/ij/
GraphPad Prism 9 GraphPad Software https://www.graphpad.com/scientific-software/prism/
Python v3.6.5 – in-house python scripts implementing watershed algorithm. Python Core Team https://www.python.org/
Vertex-based model Nestor-Bergmann et al.3,69 N/A