REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
GFP Monoclonal (GF28R) | Thermo Fisher Scientific/Invitrogen | Cat# MA5-15256 |
GFP Polyclonal | Thermo Fisher Scientific/Invitrogen | Cat# A11122; RRID: AB_221569 |
Phospho-myosin light chain 2 (S19) | Cell Signaling | Cat# 3671; RRID: AB_330248 |
Cleaved Caspase-3 (Asp175) | Cell Signaling | Cat# 9661; RRID: AB_2341188 |
C-cadherin | Developmental Studies Hybridoma Bank | 6B6 |
Phospho-ERK1/2 | Sigma Aldrich | Cat# E7028; RRID: AB_259347 |
ERK1/2 | Cell Signaling | Cat# 9102S; RRID: AB_330744 |
α-tubulin | Sigma Aldrich | Cat# T9026; RRID: AB_477593 |
Alexa Fluor 488 goat anti-mouse | Thermo Fisher Scientific/Invitrogen | Cat# A11001; RRID: AB_2534069 |
Alexa Fluor 568 goat anti-mouse | Thermo Fisher Scientific/Invitrogen | Cat# A11004; RRID: AB_2534072 |
Alexa Fluor 488 goat anti-rabbit | Thermo Fisher Scientific/Invitrogen | Cat# A11008; RRID: AB_143165 |
Alexa Fluor 568 goat anti-rabbit | Thermo Fisher Scientific/Invitrogen | Cat# A11011; RRID: AB_143157 |
Alexa Fluor 568 Tyramide Reagent | Thermo Fisher Scientific/Invitrogen | Cat# B40956 |
Goat anti-Rabbit IRDye800CW | Abcam | Cat# 216773 |
donkey anti-mouse IRDye680RD | Abcam | Cat# 216778 |
Bacterial and virus strains | ||
Subcloning Efficiency DH5α Competent Cells | Thermo Fisher Scientific | 18265017 |
Chemicals, peptides, and recombinant proteins | ||
PMSG-Intervet (Pregnant Mare Serum Gonadotrophin) | Intervet UK | N/A |
Chorulon (Human Chorionic Gonadotrophin) | Intervet UK | N/A |
MS222 – Ethyl 3-aminobenzoate methanesulfonate salt | Merck | A5040-100G |
Phenol:Chloroform:IAA, 25:24:1 | Thermo Fisher Scientific | AM9730 |
L-cysteine | Sigma Aldrich | 168149 |
Ficoll | Sigma Aldrich | PM400 |
Protease inhibitor cocktail | Promega | G6521 |
PhosSTOP phosphatase inhibitor | Sigma Aldrich | 4906845001 |
DAPI | Thermo Fisher Scientific | D1306 |
NotI | New England Biolabs | R0189L |
Critical commercial assays | ||
mMessage mMachine SP6 transcription kit | Thermo Fisher Scientific | AM1340 |
PureLink Quick Plasmid Miniprep Kit | Thermo Fisher Scientific | K210010 |
Experimental models: Organisms/strains | ||
Mature female Xenopus laevis | Bred in-house and from European Xenopus Resource Centre (EXRC). | https://xenopusresource.org/ |
Mature male Xenopus laevis | Bred in-house and from European Xenopus Resource Centre (EXRC). | https://xenopusresource.org/ |
Oligonucleotides | ||
Morpholino: MHC-B (Myosin Heavy Chain-B, myosin II) 5′-CTTCCTGCCCTGGTCTCTGTGACAT-3′ | Gene Tools LLC60 | N/A |
Morpholino: Standard control 5′-CCTCTTACCTC AGTTACAATTTATA-3′ |
Gene Tools LLC | Product name “Standard Control oligo” |
kRasV12FwdBspEI: 5′-CTGATCCGGAATGACTGAATATAAACTTGT-3′ | Eurogentec | N/A |
kRasV12RvsXhoI: 5′-GCTACTCGAGTTACATAATTACACACTTTG-3′ | Eurogentec | N/A |
MycFwdBspEI: 5′-AATATCCGGAATGCCCCTCA-3′ | Eurogentec | N/A |
MycRvsXhoI: 5′-ATACCTCGAGTTACGCACAAGAGTTC-3′ | Eurogentec | N/A |
Recombinant DNA | ||
mCherry-Histone2B in pCS2+ | Kanda et al.66 | N/A |
BFP-CAAX in pCS2+ | Bement Lab, University of Wisconsin-Madison.67 | N/A |
N-GFP in pCS2+ | Bement Lab, University of Wisconsin-Madison68 | N/A |
GFP-kRasV12 in pCS2+ | Human kRasV12 from Addgene cloned into N-GFP/pCS2+ | Addgene 2544 |
GFP-cMYC in pCS2+ | Human cMYC-IRES-GFP from Addgene cloned into N-GFP/PCS2+. | Addgene 8119 |
GFP-RhoAQ63L in pcDNA3 | Addgene | Addgene 12968 |
mCherry-UtrCH in pCS2+ | Bement Lab, University of Wisconsin-Madison68 | N/A |
Software and algorithms | ||
Fiji/ImageJ Version 2.0.0-rc-69/1.53a | NIH | https://imagej.nih.gov/ij/ |
GraphPad Prism 9 | GraphPad Software | https://www.graphpad.com/scientific-software/prism/ |
Python v3.6.5 – in-house python scripts implementing watershed algorithm. | Python Core Team | https://www.python.org/ |
Vertex-based model | Nestor-Bergmann et al.3,69 | N/A |