REAGENT or RESOURCE	SOURCE	IDENTIFIER
Chemicals, peptides, and recombinant proteins
RNA later	Thermo Fisher Scientific	Cat. AM7020
SM Buffer	Nalgene	Cat. 7252520
DNase I	Thermo Fisher Scientific	Cat. 18047019
SYBR Green	Thermo Fisher Scientific	Cat. K0221
Critical commercial assays
QIAamp MinElute Virus Spin Kit	Qiagen	Cat. 57704
Qubit	Thermo Fisher Scientific	Cat. Q32851
Illumina Nextera XT DNA Library	Illumina	Cat. FC-131-1024
Deposited data
Assembled contigs	This paper	BioProject PRJNA646512 BioSample SAMN15545081
Software and algorithms
Trim Galore 1.12	The Babraham Institute	https://github.com/FelixKrueger/TrimGalore
Fastx Toolkit 0.7	Hannon Lab	http://hannonlab.cshl.edu/fastx_toolkit/index.html
CD-HIT 4.6	(Fu et al., 2012)	http://cd-hit.org/
R 3.6.2	N/A	https://www.r-project.org/
IDBA-UD assembler 1.1.1	(Peng et al., 2012)	https://i.cs.hku.hk/∼alse/hkubrg/projects/idba_ud/
Bowtie 2.3.5	(Langmead and Salzberg, 2012)	http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
VirSorter 2.2.1	(Guo et al., 2021)	https://github.com/jiarong/VirSorter2
QIIME 1.9	(Caporaso et al., 2010)	http://qiime.org/
DESeq2 3.13	(Love et al., 2014)	https://bioconductor.org/packages/release/bioc/html/DESeq2.html
Frag Gene Scan 1.31	(Rho et al., 2010)	https://sourceforge.net/projects/fraggenescan/
Meta Genome Analyzer 6.18.3	(Huson et al., 2018)	https://software-ab.informatik.uni-tuebingen.de/download/megan6/welcome.html
Other
In-house scripts describing the data analysis process	This paper	https://github.com/lab8a/2021-iScience-Phageome