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. 2021 Aug 13;8:45. doi: 10.1186/s40779-021-00336-1

Table 3.

Tools for scRNA-seq trajectory inference

Method URL References
Monocle http://cole-trapnell-lab.github.io/monocle-release/ [66]
Monocle2 http://cole-trapnell-lab.github.io/monocle-release/ [67]
TSCAN https://github.com/zji90/TSCAN [68]
Wishbone https://github.com/ManuSetty/wishbone [69]
Slingshot https://github.com/kstreet13/slingshot [70]
Diffusion Pseudotime Software https://static-content.springer.com/esm/art%3A10.1038%2Fnmeth.3971/MediaObjects/41592_2016_BFnmeth3971_MOESM375_ESM.zip [71]
Wanderlust https://github.com/wanderlust/wanderlust [72]