Table 3.
Tools for scRNA-seq trajectory inference
Method | URL | References |
---|---|---|
Monocle | http://cole-trapnell-lab.github.io/monocle-release/ | [66] |
Monocle2 | http://cole-trapnell-lab.github.io/monocle-release/ | [67] |
TSCAN | https://github.com/zji90/TSCAN | [68] |
Wishbone | https://github.com/ManuSetty/wishbone | [69] |
Slingshot | https://github.com/kstreet13/slingshot | [70] |
Diffusion Pseudotime Software | https://static-content.springer.com/esm/art%3A10.1038%2Fnmeth.3971/MediaObjects/41592_2016_BFnmeth3971_MOESM375_ESM.zip | [71] |
Wanderlust | https://github.com/wanderlust/wanderlust | [72] |