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. 2023 Oct 9;10:401. Originally published 2021 May 19. [Version 2] doi: 10.12688/f1000research.51117.2

Table 2. Repositories containing source code for the included publications.

Publication Code LSR
81 Available under: https://github.com/ijmarshall/robotreviewer, older version: https://figshare.com/articles/Spa/997707 Base
96 Available under: https://github.com/jind11/LSTM-PICO-Detection Base
55 Available under: https://github.com/bepnye/EBM-NLP https://colab.research.google.com/drive/1Ir52OmkJ2C_Iy9V_eS-_KFVLircJ4MXp
https://colab.research.google.com/drive/1YbbQojM147Ybt1nEcyoXTqlvefmwMg-q
Base
54 Available under: https://github.com/jind11/Deep-PICO-Detection Base
97 Available under: https://ii.nlm.nih.gov/DataSets/index.shtml Base
85 Available under: https://github.com/Tian312/PICO_Parser Base
95 Available under: https://github.com/L-ENA/HealthINF2020
https://www.kaggle.com/lenaschmidt0493/qa-integrated-biomedical-ner-classifier-for-pico
Base
69 Available under: https://github.com/ijmarshall/trialstreamer Base
47 Unclear if Java code is accessible, pending user access: https://semrep.nlm.nih.gov/SemRep.v1.8_Installation.html#Download Base
75 Used public Google implementation of transformers + https://zenodo.org/record/1303259#.X4wSoaySk2w Base
60 Available under: https://github.com/smileslab/Brain_Aneurysm_Research/tree/master/BioMed_Summarizer Update
74 Available under: https://github.com/nstylia/pico_entities/ Update
98 Available under: https://github.com/wds-seu/Aceso Update
62 Available under: https://github.com/jayded/evidence-inference Update
61 Available under: https://github.com/allenai/ms2 Update
99 Available under: https://github.com/Tian312/MD-Attention Update
38 Available under: https://github.com/kilicogluh/CONSORT-TM Update
35 Available under: https://github.com/lcampillos/Medical-NER Update
36 Available under: https://gitlab.com/tomaye/ecai2020-transformer_based_am Update
50 Available under: https://github.com/jetsunwhitton/RCT-ART Update
34 Available under: https://github.com/LivNLP/ODP-tagger Update
33 Available under: https://data.mendeley.com/datasets/ccfnn3jb2x/1 Update
82 Available under: https://osf.io/2dqcg/ Update
51 Available under: https://zenodo.org/record/6365890 Update
45 Available under: https://github.com/gauravsc/pico-tagging Update
67 Available under: https://github.com/MichealAbaho/Label-Context-Aware-Attention-Model Update
100 Available under: https://github.com/evidence-surveillance/sent2span Update
70 Available under: https://zenodo.org/record/6647853#.ZBnpLXbP2Uk Update
37 Available under: https://github.com/anjani-dhrangadhariya/distant-PICO Update