Table 2.

Genome characteristics, number of scaffolds and BUSCO scores (genome completeness) for wCer1, wCer4, wCer5 (in bold) and the genomes of 16 reference strains (ordered by supergroups A and B, and then alphabetically)

Strain	Host	Supergroup	Accession No.	Genome size (bp)	Number of scaffolds	GC%	Predicted CDSs	tRNAs	rRNAs	BUSCO score
wAu	Drosophila simulans	A	LK055284	1,268,461	1	35.2	1276	34	1 of each	185 (83.7%)
wCauA	Carposina sasakii	A	NZ_CP041215	1,449,344	1	35.0	1442	34	1 of each	184 (83.3%)
wCer1	Rhagoletis cerasi(RcerHB)	A	JADCNC01000000	1,255,676	16	35.2	1196	34	1 of each	183 (82.8%)
wCer2	Drosophila simulans (DsimRC50)	A	SOZK01000000	1,325,568	11	35.2	1259	34	1 of each	184 (83.3%)
wCer4	C. capitata(Ccap10.3)	A	JADCND01000000	1,239,646	65	35.1	1214	34	1 of each	184 (83.3%)
wHa	Drosophila simulans	A	NC_021089	1,295,804	1	35.1	1235	34	1 of each	183 (82.8%)
wIrr	Haematobia irritans irritans	A	NZ_CP037426	1,352,354	1	35.3	1439	34	1 of each	184 (83.3%)
wMeg	Chrysomya megacephala	A	NZ_CP021120	1,376,868	1	34.0	1298	34	1 of each	182 (82.4%)
wMel	Drosophila melanogaster	A	NC_002978	1267,782	1	35.2	1271	34	1 of each	184 (83.3%)
wRec	Drosophila recens	A	NZ_JQAM01000000	1,126,656	43	35.1	1111	34	1 of each	181 (81.9%)
wRi	Drosophila simulans	A	NC_012416	1,445,873	1	35.2	1396	34	1 of each	183 (82.8%)
wSuz	Drosophila suzukii	A	NZ_CAOU02000000	1,415,350	110	35.7	1321	34	1 of each	184 (83.3%)
wVitA	Nasonia vitripennis	A	NZ_MUJM01000000	1,211,929	142	35.1	1097	34	1 of each	185 (83.7%)
wAlbB	A. albopictus	B	NZ_CP031221	1,484,007	1	34.4	1418	34	1 of each	180 (81.4%)
wCer5	Rhagoletis cerasi(RcerAS)	B	JADCNE01000000	1,180,723	57	33.9	1091	34	1 of each	179 (81.0%)
wDi	Diaphorina citri	B	CP051264	1,538,623	1	33.9	1418	34	1 of each	184 (83.3%)
wNo	Drosophila simulans	B	NC_021084	1,301,823	1	34.0	1220	34	1 of each	184 (83.3%)
wPip	Culex quinquefasciatus	B	NC_010981	1,482,455	1	34.2	1410	34	1 of each	181 (81.9%)
wStri	Laodelphax striatellus	B	NZ_MUIX01000000	1,786,382	2	33.8	1747	34	1 of each	183 (82.9%)