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. 2021 Aug 13;21:374. doi: 10.1186/s12870-021-03145-9

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© The Author(s) 2021

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 4 — Haplotype analyses of OsAUX1, OsCd1, OsHMA3 and OsCLT1. Gene structures (left) and RV, SW and RW of different haplotypes (right) of (a, e) OsAUX1 (LOC_Os01g63770) for qSRL1.1/qRV1.3/qSL1.3, (b, f) OsCd1 (LOC_Os03g02380) for qSW3.1/qRW3.1, (c, g) OsHMA3 (LOC_Os07g12900) for qRW7.1, and (d, h) OsCLT1 (LOC_Os01g72570) for qSW1.1/qRW1.2. Brown colored numbers indicate the key SNPs that occurred in major haplotypes and resulted in significant differences of CGR indices. The violin map was constructed in R. Student’s t-tests were used to determine p-values (p < 0.05). Num, number of accessions; Ind, indica; Tej, temperate japonica; trj, tropical japonica