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. 2021 Aug 3;17(8):e1009247. doi: 10.1371/journal.pcbi.1009247

Table 1. Comparison of existing aptamer predictive studies.

Algorithm Aptamer Dataset No-aptamer Dataset Some Features Classifier MCC
This Study DNA aptamers (n = 238) Protein binding DNA (n = 4885) 6-mers for all sequences, Sequence features Support Vector Machines 0.896
[35] DNA/RNA aptamers (n = 159)
Small Molecule Targets (n = 20)
Randomly paired aptamers to Small Molecule targets 1,2-mers for aptamers, Physical-chemical properties of targets Nearest Neighbors 0.670
[57] DNA/RNA aptamers (n = 725)
Protein Targets (n = 164)
Randomly paired aptamers to protein targets 1,2-mers for aptamers, 1,2-mers for targets Physical-chemical properties of targets Random Forest 0.461