Table 3.

Germplasm lines selected from the rice diversity panel 1 (RDP1) population in this study.

NSFTV ID			NSFTV155	NSFTV224	NSFTV306	NSFTV310	NSFTV350
GSOR ID			301146	301215	301296	301300	301340
Name			Ta Mao Tsao	Karabaschak	WIR 3764	R 101	Ligerito
Region			East Asia	East Europe	Central Asia	Africa	South America
AC (%)			18.80	16.76	16.87	10.15	16.95
GT			4.82	6.38	6.88	3.38	4.88
GPC (%)			10.40	10.99	11.07	10.48	10.83
GV			10.70	12.24	11.72	9.48	11.92
LWR			2.17	2.27	2.03	3.79	2.61
PC			light brown	red	light brown	light brown	light brown
subgroup			TEJ	TEJ	TEJ	TRJ	TRJ
SNP information
AC	1	3,184,457	T	T	T	T	T
	1	3,329,456	A	A	A	A	A
	6	1,765,761	G	G	G	T	G
	6	20,854,368	A	A	A	G	G
	8	24,785,382	C	C	C	G	C
	12	17,068,981	G	G	G	G	G
GPC	11	11,666,233	A	A	A	A	G
	12	2,673,221	C	C	C	T	C
GT	2	20,220,266	T	T	T	A	T
	3	13,235,693	A	A	A	G	G
	3	16,312,643	C	C	C	C	C
	4	13,968,254	C	C	C	T	C
	4	24,196,718	A	G	G	G	G
	6	2,195,964	G	A	A	A	G
	6	6,687,883	T	C	C	T	T
	6	6,830,286	G	G	G	G	G
	6	7,024,152	T	T	T	C	C
	8	4,750,713	A	A	A	G	G
	8	20,763,355	G	G	G	G	G
GV	3	8,210,958	C	C	C	C	C
	3	16,733,441	G	G	G	T	T
	5	5,355,339	C	C	C	A	A
	6	12,504,994	C	T	T	C	C
	7	24,413,754	A	G	G	G	G
	12	21,773,741	T	G	T	T	G
LWR	3	5,210,399	A	A	A	A	A
	3	16,733,441	G	G	G	T	T
	3	16,749,510	C	C	C	C	C
	4	19,267,463	C	C	C	T	C
	4	24,917,693	T	T	T	T	T
	5	5,371,772	G	G	G	A	A
	5	28,480,050	G	G	G	G	G
	5	28,487,739	C	C	C	C	C
	7	217,125	T	T	T	T	T
	7	22,113,010	A	A	A	T	A
	7	25,214,651	C	C	C	T	C
PC	2	9,655,892	C	T	C	C	C
	4	20,157,178	C	C	C	C	C
	4	28,610,659	G	G	G	G	G
	7	6,068,017	C	C	C	C	C
	7	7,239,363	A	A	A	A	T
	7	10,922,526	C	C	C	C	C
	8	2,373,426	A	A	A	A	A

GT, gelatinization temperature; AC, amylose content; GPC, grain protein content; PC, pericarp color; LWR, length/width ratio; and GV, grain volume.