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Performance of the various primer sets tested for the detection of avian eukaryotic endoparasites
| Primer set | Initial read pair number | Read pairs kept (average per sample) | Proportion affiliated | No. different parasite families in blood samples | No. different parasite families in fecal samples |
|---|---|---|---|---|---|
| xca | 172,319 | 158,959 (9,935) | 99% | 3 | 3 |
| nes | 179,008 | 119,171 (7,448) | 97% | 2 | 1 |
| dc2 | 114,461 | 42,733 (2,670) | 1% | n.a | n.a |
| bl3 | 119,190 | 100,086 (6,255) | 99% | 4 | 2 |
| bl4 | 156,153 | 135,632 (8,477) | 99% | 4 | 3 |
